View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5101_low_8 (Length: 246)
Name: NF5101_low_8
Description: NF5101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5101_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40432523 - 40432295
Alignment:
| Q |
1 |
tttgttcatgcagctggtaaacaatgcagcaagtattttattactataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaa |
100 |
Q |
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| T |
40432523 |
tttgttcatgcagctggtaaacaatgcagcaagtattttattacgataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaa |
40432424 |
T |
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| Q |
101 |
tatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctctgtacgtcttatcaaccctaatattttcaaacg |
200 |
Q |
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| T |
40432423 |
tatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcggctctgtacgtcttatcaaccctaatattttcaaacg |
40432324 |
T |
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| Q |
201 |
cctcaagtataatgattgtcttgttaatg |
229 |
Q |
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| T |
40432323 |
cctcaagtataatgattgtcttgttaatg |
40432295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 40436070 - 40435910
Alignment:
| Q |
68 |
caatgaatggcattccaacacacacagttgaaatatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctc |
167 |
Q |
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| T |
40436070 |
caattaatggcattacaacatacatagttgagatagcaaatacatgtgtgagaggatgcaaaatctctaacattcatgttgcttgtggtggtttaagctc |
40435971 |
T |
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| Q |
168 |
tgtacgtcttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
228 |
Q |
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| T |
40435970 |
tgcacattttatcaaaccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaat |
40435910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 14473344 - 14473292
Alignment:
| Q |
176 |
ttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
228 |
Q |
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| T |
14473344 |
ttatcaacccaacaattttcaaacgcctcaataataaggattgtcttgttaat |
14473292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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