View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5102_high_1 (Length: 435)
Name: NF5102_high_1
Description: NF5102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5102_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 32 - 409
Target Start/End: Complemental strand, 35410092 - 35409716
Alignment:
| Q |
32 |
ccagatgccgctcagccacatggcattagactacttactgaagattatccttatgcggctgatggactccccatatggactagtatagagaagttggtca |
131 |
Q |
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| T |
35410092 |
ccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtca |
35409993 |
T |
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| Q |
132 |
ggacctgtgtgaaccattactacaaagatttaaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
231 |
Q |
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|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409992 |
ggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctga |
35409893 |
T |
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| Q |
232 |
tcataaaaatgctacctggtggcctaaactaaacacccctgatgatgtccatctcattgctctccacgattatctggactgtatcagcgcaacatgctgt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
35409892 |
tcataaaaatgctacctggtggcctaaactaaacacccctgaggatct-catctccttgcttaccaccattatctggactgtatcagcgcaacatgctgt |
35409794 |
T |
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| Q |
332 |
cttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409793 |
cttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattcctaatga |
35409716 |
T |
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