View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5102_high_4 (Length: 319)
Name: NF5102_high_4
Description: NF5102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5102_high_4 |
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| [»] scaffold0205 (1 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 21178948 - 21178676
Alignment:
| Q |
30 |
catttgacctgcaaaagaatgaaacaaaggataagacaactcttggtgtatagtatatgaattgtaaaactgatttaaggacaagataaattggaggtaa |
129 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21178948 |
catttgacctgcaaaagaatgaaacacaagataagacaactcttgatgtataatgtttgaattgtaaaactgatttaaggacaagacaaattggaggtaa |
21178849 |
T |
|
| Q |
130 |
aggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaacttttatttctctatagctgcgtgtctttacactaggtgttccactcaat |
229 |
Q |
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|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21178848 |
gggataacacaaaaactgaaatttgtgtcgttcgttaaaccacaacacaacttttatttctctatagctgcgtgtctttacactaggtgttccattcaat |
21178749 |
T |
|
| Q |
230 |
tttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatcttgacacaggtt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178748 |
tttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatcttgacacaggtt |
21178676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 2776 - 2897
Alignment:
| Q |
181 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2776 |
ttttatttctctatagctgcgtgtctttacactaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
2875 |
T |
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| Q |
281 |
agtatccatcttgacacaggtt |
302 |
Q |
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| T |
2876 |
agtatccatcttgacacaggtt |
2897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 28360643 - 28360764
Alignment:
| Q |
181 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
280 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28360643 |
ttttatttctctatagctgcgtgtctttacactagatgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
28360742 |
T |
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| Q |
281 |
agtatccatcttgacacaggtt |
302 |
Q |
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||||||||||||| |||||||| |
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| T |
28360743 |
agtatccatcttggcacaggtt |
28360764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 18273870 - 18273992
Alignment:
| Q |
181 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
280 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18273870 |
ttttatttctctatagctgtgtgtctttaatctaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
18273969 |
T |
|
| Q |
281 |
agtatccatcttgacacaggttc |
303 |
Q |
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||||||||||||||||||||||| |
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| T |
18273970 |
agtatccatcttgacacaggttc |
18273992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 37695503 - 37695573
Alignment:
| Q |
114 |
gataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
184 |
Q |
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|||||||||||||||| || || ||||||||||| |||| ||||| || | || |||||||||||||||| |
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| T |
37695503 |
gataaattggaggtaagagacaagacaaaaactgatatttttgtccctcatcaaaccacaacacaactttt |
37695573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 41934740 - 41934632
Alignment:
| Q |
76 |
tgtatagtatatgaattgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaac |
175 |
Q |
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|||||||| | ||| |||||||||||||| | ||| ||||||| |||| | ||| || || ||||||||||||||| ||| |||| ||| ||||||| |
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| T |
41934740 |
tgtatagtgtgtgatttgtaaaactgattaagggatgagataaactggatgcaaaagacaagacaaaaactgaaattcttgtacttcactaaaccacaac |
41934641 |
T |
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| Q |
176 |
acaactttt |
184 |
Q |
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||||||||| |
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| T |
41934640 |
acaactttt |
41934632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 39792956 - 39792869
Alignment:
| Q |
95 |
aaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactt |
182 |
Q |
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||||||| |||| |||||||||||||||||| ||| |||| ||||||| ||||||| |||||||| || |||||||||||||| |
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| T |
39792956 |
aaaactgttttagggacaagataaattggagacaaaagatatgacaaaaattgaaattcttgtccttcaccaaaccacaacacaactt |
39792869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 1595 - 1688
Alignment:
| Q |
91 |
ttgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
184 |
Q |
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||||||||||| || ||||| | || ||| |||||| || ||| || |||||||||||||||| ||||| || || |||||||||||||||| |
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| T |
1595 |
ttgtaaaactgtttcaaggataggacaaactggaggcaagggacaagacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttt |
1688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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