View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-1 (Length: 1255)
Name: NF5103-Insertion-1
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 736; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 8 - 929
Target Start/End: Complemental strand, 36704362 - 36703448
Alignment:
| Q |
8 |
ccatgatagcttttttcaactctcattgattttactaccacgatatatttattatattgtacttcaaataatgtattgtagcatataggagtagtttttt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
36704362 |
ccataatagcttttttcaactctcattgattttactaccaagatatatttattatattgtactacaaataatgtattgtagtatataggagtagtttttt |
36704263 |
T |
|
| Q |
108 |
catttagttgagattcattcgagtgnnnnnnnnctcaactgagtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttct |
207 |
Q |
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| T |
36704262 |
catttagttgagattcattcgagtgttttttttctcaactgagtatgttagatttccatcaaaattaaaataaaaagaatatagactgtgttattcttct |
36704163 |
T |
|
| Q |
208 |
ccatatttaatcacaaaagttgtcttgttttttcaacttagatagatcggttgaatttctccatttttcactaacctcacactttcattgcggtttacta |
307 |
Q |
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| T |
36704162 |
ccatatttaatcacaaaagttgtcttgttttttcaacttagatatatcggtcgaatttctccatttttcactaacctcacactttcattgcggtttacta |
36704063 |
T |
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| Q |
308 |
tttttaaacgaccattatttt-gtgttattcttacatgagataataagcgaaagaagttnnnnnnnnnnnnnnnnnnncatacatttgatagtgcaaatt |
406 |
Q |
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| T |
36704062 |
tttttaaacaaccattatttttgtgttattcttacatgagataataagcgaaagaagttaaaaaaaaa----------cat-catttgatagtgcaaatt |
36703974 |
T |
|
| Q |
407 |
catggtactatttgataacaaaactgaatgcacgtgatgcctttctatttgcacatgttattccttctcgtacacttcataagtttaccctttcttataa |
506 |
Q |
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| T |
36703973 |
catagtactatttgataacaaaactgaatgcacgtgatgcctttctatttgcacatgttattccttctcgtaca-ttcacaagtttaacctttcttataa |
36703875 |
T |
|
| Q |
507 |
aggaaaaaagaacaattcttcacaagaaatttgtgtttgca---ttccacaaactaagtgaatttcaaagttacaaattagaaggactaaatgttatttc |
603 |
Q |
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| T |
36703874 |
aggaaaaaagaacaattcttcacaagaaatt-gtgtttgcagcattccacaaactaagtgaatttcaaagttacaaattagaaggactaaatgttatttc |
36703776 |
T |
|
| Q |
604 |
ataatttgttggtttttgatttttaaatgtaattaaacagctacaatagctgctaattaaattcatcccttcaaatcaaagaccataattaattaaaata |
703 |
Q |
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| T |
36703775 |
ataatttgttggtttttgatttttgaatgtaattaaacagctacaatagctgctaattaaattcatcccttcaaatcaaagaccataattaattaaaata |
36703676 |
T |
|
| Q |
704 |
aaaaattatgtatcattccctagacatgatatttgaggaagcaccagcttgatctggcaatgatgaatttggtaatggagaatccaaattgatagcatct |
803 |
Q |
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| T |
36703675 |
aaaaattatgtatcattccctagacatgatatttgaggaagcaccagcttgatctggcaatgatgaatttggtaatggagaatccaaattgatagcatct |
36703576 |
T |
|
| Q |
804 |
tggtgaggtgggtctgatataataatattaatagggggtgcaggattaagg-atttggtgatagtgggaatgatggaacatctacaaagtggacaagttg |
902 |
Q |
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| T |
36703575 |
tggtgaggtgggtctgatataataatattaatagggggtgcaggattaaggaatttggtgatagtgggaatgatggaacatctacaaagtggacaagttg |
36703476 |
T |
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| Q |
903 |
aatttgattgtagcc-atgatgtatgca |
929 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
36703475 |
aatttgattgtagccaatgatgtatgca |
36703448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 36711398 - 36711358
Alignment:
| Q |
147 |
tgagtatgttagatttccatcaaaattaaaataaaaagaat |
187 |
Q |
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| T |
36711398 |
tgagtatgttagatttccgtcaaaattaaaacaaaaagaat |
36711358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 36711509 - 36711475
Alignment:
| Q |
8 |
ccatgatagcttttttcaactctcattgattttac |
42 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
36711509 |
ccatgatagcttttttcaacgctcattgattttac |
36711475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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