View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5103-Insertion-10 (Length: 938)

Name: NF5103-Insertion-10
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5103-Insertion-10
NF5103-Insertion-10
[»] chr5 (12 HSPs)
chr5 (332-627)||(43239318-43239613)
chr5 (98-320)||(43239706-43239927)
chr5 (824-936)||(43238867-43238976)
chr5 (355-491)||(43246198-43246334)
chr5 (355-491)||(43252663-43252799)
chr5 (358-459)||(43229696-43229797)
chr5 (7-78)||(43240519-43240590)
chr5 (7-77)||(38928006-38928075)
chr5 (155-226)||(43246527-43246598)
chr5 (155-226)||(43252992-43253063)
chr5 (565-613)||(43246130-43246178)
chr5 (565-613)||(43252595-43252643)
[»] chr1 (1 HSPs)
chr1 (7-77)||(46354435-46354505)
[»] chr7 (1 HSPs)
chr7 (7-77)||(3571063-3571132)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 332 - 627
Target Start/End: Complemental strand, 43239613 - 43239318
Alignment:
Q  332 tttcgggataacatgtttcgcattaatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagaccattctctctttttaa 431  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  43239613 tttcgggataacatgttttgcattaatcttacttgattttcctatttactagctgatcaacacattaaaatagggactttagaccattctctctttttaa 43239514  T
Q  432 tatagagacacctcagatcatgaattgtgtttggctatgtatatcccactttattctcttcaattgaccaaatcatttacccacactcaatcaaaaagct 531  Q
    || |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43239513 taaagagacacctcagatcaataattgtttttggctatgtatatcccactttattctcttcaattgaccaaatcatttacccacactcaatcaaaaagct 43239414  T
Q  532 aaatatattcatatatttacttcatacctatggcttaactcatcatctctagaaaatcaatattgtttctttgcttgagttggcttctttaaaagc 627  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  43239413 aaacatattgatatatttacttcatacctatggcttaactcatcatacctagaaaatcgatattgtttgtttgcttgagttggcttctttaaaagc 43239318  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 98 - 320
Target Start/End: Complemental strand, 43239927 - 43239706
Alignment:
Q  98 atagatatagattatagataatactacaacaaaagaatgaaagaaggnnnnnnnnnn-gcaacaaaaattgcctcgcacattattcgttatggtttcgct 196  Q
    |||| |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  43239927 atagttatagattatagataatactacaacaaaagaatgaaagaagaaaaaaaaaagagcaacaaaaattgcctcgcacattattcgttatggtttcgct 43239828  T
Q  197 gtaaaagaattggcttgatatagcgccttcctcnnnnnnnnnnnnnnnnngaataatgatatatgtcccgaagttttttatcccgaccaattcaaacccg 296  Q
     |||||||||||||||||||||||||||||||                  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43239827 ttaaaagaattggcttgatatagcgccttcct--ttttctttctttttttgaataatgatatatgttccgaagttttttatcccgaccaattcaaacccg 43239730  T
Q  297 tataaaataacatgatcatcacct 320  Q
    ||||||||||||||||||||||||    
T  43239729 tataaaataacatgatcatcacct 43239706  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 824 - 936
Target Start/End: Complemental strand, 43238976 - 43238867
Alignment:
Q  824 aactagaatttcttttaaagagaggaaattttggcgttgttggtattgttaccattctctctcataggcttttttgttgtgtgttgtcaccgtctttatt 923  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  43238976 aactagaatttcttttaaagagagaaaattttg-cggtgttggtattgttaccattctctctcataggcttttttgttgt-tgttgttaccgtctttatt 43238879  T
Q  924 agacgtcatgttc 936  Q
     || |||||||||    
T  43238878 -gaagtcatgttc 43238867  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 355 - 491
Target Start/End: Complemental strand, 43246334 - 43246198
Alignment:
Q  355 taatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagaccattctctctttttaatatagagacacctcagatcatga 454  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||| |||||||||||||||||  |    
T  43246334 taatattacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagatcagaa 43246237  T
Q  455 at--tgtgtttggctatgtatatcccactttattctctt 491  Q
    ||  | | |||||||||||||||||||||||||||||||    
T  43246236 attatttttttggctatgtatatcccactttattctctt 43246198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 355 - 491
Target Start/End: Complemental strand, 43252799 - 43252663
Alignment:
Q  355 taatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagaccattctctctttttaatatagagacacctcagatcatga 454  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||| |||| |||||||||||||||||  |    
T  43252799 taatattacttgttttacctatttactagctggtcaacccattaaaatagggactttagaccatt--ctcttttgaataaagagacacctcagatcagaa 43252702  T
Q  455 at--tgtgtttggctatgtatatcccactttattctctt 491  Q
    ||  | | |||||||||||||||||||||||||||||||    
T  43252701 attatttttttggctatgtatatcccactttattctctt 43252663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 43229797 - 43229696
Alignment:
Q  358 tcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagaccattctctctttttaatatagagacacctcagatcatgaatt 457  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||| |||| |||||||    
T  43229797 tcttacttgtttttcctatttactagttggtcaacccattaaaatagggactttagaccattctctcttttgaataaagagacaccttagattatgaatt 43229698  T
Q  458 gt 459  Q
    ||    
T  43229697 gt 43229696  T

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Target: chr5; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 43240590 - 43240519
Alignment:
Q  7 aagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaagt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43240590 aagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaataacaaattgaaagt 43240519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 38928006 - 38928075
Alignment:
Q  7 aagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 77  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  38928006 aagtgcaaggcatttgtggtg-gtaactgatgaaagtccttttcattacataaaaaatagcaaattgaaag 38928075  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 43246598 - 43246527
Alignment:
Q  155 gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc 226  Q
    |||||||||||| |||| ||||||||||| |||||||||  ||||||||||| || |||||||||| |||||    
T  43246598 gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc 43246527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 43253063 - 43252992
Alignment:
Q  155 gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc 226  Q
    |||||||||||| |||| ||||||||||| |||||||||  ||||||||||| || |||||||||| |||||    
T  43253063 gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc 43252992  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 613
Target Start/End: Complemental strand, 43246178 - 43246130
Alignment:
Q  565 cttaactcatcatctctagaaaatcaatattgtttctttgcttgagttg 613  Q
    |||||||||| ||| |||||||||||||||||||| ||| |||||||||    
T  43246178 cttaactcataatccctagaaaatcaatattgtttgtttacttgagttg 43246130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 613
Target Start/End: Complemental strand, 43252643 - 43252595
Alignment:
Q  565 cttaactcatcatctctagaaaatcaatattgtttctttgcttgagttg 613  Q
    |||||||||| ||| |||||||||||||||||||| ||| |||||||||    
T  43252643 cttaactcataatccctagaaaatcaatattgtttgtttacttgagttg 43252595  T

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Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 46354435 - 46354505
Alignment:
Q  7 aagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 77  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  46354435 aagtgcaaggcatttgtggttggtaactgatggaagtccttttcattacgtaaaaaatagcaaattgaaag 46354505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 3571063 - 3571132
Alignment:
Q  7 aagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 77  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  3571063 aagtgcaaggcatttgtggtg-gtaattgatgaaagtccttttcattacataaaaaatagcaaattgaaag 3571132  T

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