View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-11 (Length: 886)
Name: NF5103-Insertion-11
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 41133641 - 41133392
Alignment:
| Q |
111 |
aaaaagggttaaggatgtcatatactaacatacataacctatatagacattcaacatattttctcaataaagattatgttaacggtagaacatggataag |
210 |
Q |
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| T |
41133641 |
aaaaagggttaaggatgtcatatactaacatacataacctatatagacgttcaacatattttctcaataaagattatgttaacggtagaacatggataag |
41133542 |
T |
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| Q |
211 |
gcaaaacatacacataatgaaacacagtcgtaacacagcatgaatttcagtcacatggatatgacatgatcataaattcgtatcaaagttc-----ttat |
305 |
Q |
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| T |
41133541 |
gcaaaacatacacataatgaaacacagtcgtaacacagcatgaatttcagtcacatggatatgacaagatcataaattcgtatcaaagttcttgaattat |
41133442 |
T |
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| Q |
306 |
caacacatcacatattccacgaaatatgcaatgcaatgatttgattactt |
355 |
Q |
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| T |
41133441 |
caacacatcacatattccacgaaatatgcaatgcaatgatttgattactt |
41133392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 41133787 - 41133673
Alignment:
| Q |
7 |
agtaaataaaatgattcaatttttgtacagtccacaacatgtaatac--------tcttccaattttaggaaatatcttgacctaatgcacattgttacg |
98 |
Q |
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| T |
41133787 |
agtaaataaaatgattcaatttttgtacagtccacaacatgtaatacactaatactcttccaattttaggaaatatcttgacctaatgcacattgttacg |
41133688 |
T |
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| Q |
99 |
tcacaaacctcaaaa |
113 |
Q |
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| T |
41133687 |
tcacaaacctcaaaa |
41133673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 807 - 885
Target Start/End: Complemental strand, 41133372 - 41133294
Alignment:
| Q |
807 |
acaagttcacaattacgcaaaatcatactttctcaagttctcaatcacactttcactcacatgctcgtcttaaatcata |
885 |
Q |
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| T |
41133372 |
acaagttcacaattacgcaaaatcacactttctcaagttcccaatcaccctttcactcacatgctcgtgttaaatcata |
41133294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 799
Target Start/End: Original strand, 41132749 - 41132789
Alignment:
| Q |
759 |
tccttaatgagtgtcatcatttgcatgagtcgtatatttca |
799 |
Q |
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| T |
41132749 |
tccttaatgagtgtcatcaattgcatgagtagtatatttca |
41132789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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