View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-12 (Length: 805)
Name: NF5103-Insertion-12
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 19280767 - 19281104
Alignment:
| Q |
7 |
aatactcaatgtataataattaatatgataatcttcttagattttttgccaagattaatggaatgattaattattatttttgggtagatgttgacacaac |
106 |
Q |
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| T |
19280767 |
aatactcaatgtataataat----atgataatcttcttagattttttgccaagattaatggaatgattaattattatttttgggtagatgttgacacaac |
19280862 |
T |
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| Q |
107 |
aattggagcccctagctcagcaacaaatagatgggatagtggacctgaatacttcatcgtttcaagcagaagaagctctctctaaaggccatgaacagct |
206 |
Q |
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| T |
19280863 |
aattggagcccctagctcagcaacaaatagatgggatagtggacctgaatacttcatcgtttcaagcagaagaagctctctctaaaggccatgaacagct |
19280962 |
T |
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| Q |
207 |
ccacaatgctcttgttcacaccatcgccggagggcctgtaattgacggtatgcaacagatggtcgccgccatgggcaggatttccaatcttgaaaaattt |
306 |
Q |
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| T |
19280963 |
ccacaatgctcttgttcacaccatcgccggagggcctgtaattgacggtatgcaacagatggtcgccgccatgggcaggatttccaatcttgaaaaattt |
19281062 |
T |
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| Q |
307 |
gttcatgaggtaaacaatttatatcttccctaacatagacct |
348 |
Q |
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| T |
19281063 |
gttcatgaggtaaacaatttatatcttccctaacatagacct |
19281104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 387 - 789
Target Start/End: Original strand, 19281193 - 19281600
Alignment:
| Q |
387 |
ttgaggtgaacctttgaattttctttagcttccaattagaccaaccataaaaactagtagtatatacatgtcatataaagtaatacattttcaatttgac |
486 |
Q |
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| T |
19281193 |
ttgaggtgaacctttgaattttctttagcttcctattagaccaaccataaaaactagtagtatatgcatgtcatataaagtaatacattttcaatttgac |
19281292 |
T |
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| Q |
487 |
tattgtagagactagaga--atctctcttcatgtgtttatgtcaaaattatatgtgga---ataatacatgacttgtccatcccctttttggtccaagaa |
581 |
Q |
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| T |
19281293 |
tattgtagagactagagagaatctctcttcatgtgtttatgtcaaaattatatatgagctcattatacatgacttgtccatcccctttttggtccaagaa |
19281392 |
T |
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| Q |
582 |
accatgtttgaaaatggattggaaatcatgatcaatttcgtgtttgcatacaaatatatgggttatcttaatcattttaaggatctcaaatttctctagn |
681 |
Q |
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| T |
19281393 |
accatgtttgaaaatggattggaaatcatgatcaatttcgtgtttgcatacaaatatatgggttatcttaatcattttaaggatctcaaatttctctaga |
19281492 |
T |
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| Q |
682 |
nnnnnnnggataatctcaaattaattaacatgcataaatgtcaaatattaattaattaaaatgttactttgagtcatgcagttcaaactgtaattcaatg |
781 |
Q |
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| T |
19281493 |
aaaaaaaggataatctcaaattaattaacatgcataaataccaaacattaattaattaaaatgttactttcagtcatgcggttcaacctgtaactcaatg |
19281592 |
T |
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| Q |
782 |
gttcgatc |
789 |
Q |
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| T |
19281593 |
gttcgatc |
19281600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 387
Target Start/End: Original strand, 19281124 - 19281155
Alignment:
| Q |
356 |
tgaaccaacctatttttattgaaacatcatat |
387 |
Q |
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| T |
19281124 |
tgaaccaacctatttttattgaaacatcatat |
19281155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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