View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-13 (Length: 658)
Name: NF5103-Insertion-13
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-13 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 1763363 - 1762906
Alignment:
| Q |
8 |
aattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1763363 |
aattcaaccatagctagatgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttg |
1763264 |
T |
|
| Q |
108 |
caaatctttctggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaat |
207 |
Q |
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| T |
1763263 |
caaatctttccggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaat |
1763164 |
T |
|
| Q |
208 |
ttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcaccattgttaactgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1763163 |
ttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcaccattgttaactgc |
1763064 |
T |
|
| Q |
308 |
atgtacacatttttattcaatatcttcaattaattgttaagaaaagcttatgaactaaaaaatgtgctacaattatacaagatctttcaagtgtttgcga |
407 |
Q |
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| T |
1763063 |
atgtacacatttttattcaatatcttcaattaattgttaagaaaagcttatgaactaaaaaatgtgctacaattctacaagatctttcaagtgtttgcga |
1762964 |
T |
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| Q |
408 |
gcaattgatagatgcttaaagagaaattttttgtcatagtaggcatgtcggacttaata |
466 |
Q |
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| T |
1762963 |
gcaattgatagatgcttaaagagaaat-ttttgtcatagtaggcatgtcggacttaata |
1762906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 471 - 658
Target Start/End: Complemental strand, 1762868 - 1762681
Alignment:
| Q |
471 |
agtcatttatgtaactggatccaccagaccaaaacgagaccgaccgacccatttgacggctctagctaaaacataatgtattggaacatgagactttagt |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762868 |
agtcatttatgtaactggatccaccagaccaaaacgagaccgaccgacccatttgatggctctagctaaaacataatgtattggaacatgagactttagt |
1762769 |
T |
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| Q |
571 |
acatagattgtgtaagaacataccgttttcatgcttttcagttgatttgcatctataataccatcatttccacaaattttaagcacct |
658 |
Q |
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| T |
1762768 |
acatagattgtgtaaaaacataccgttttcatgcttttcagttgatttgcatctacaataccatcttttccacaaattttaagcacct |
1762681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 25197782 - 25197611
Alignment:
| Q |
53 |
attccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagct |
152 |
Q |
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|||||||||||||| ||| ||||||||| |||||| | |||| |||| ||||||| ||||||||| || ||||| | |||||||| ||||| | | |
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| T |
25197782 |
attccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcgaccccccatatat |
25197683 |
T |
|
| Q |
153 |
ctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaat |
224 |
Q |
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| T |
25197682 |
ccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaat |
25197611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 25197572 - 25197527
Alignment:
| Q |
263 |
ggtggataaagcctcaatgtctcttgaatcaccattgttaactgca |
308 |
Q |
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| T |
25197572 |
ggtgaataaagccttaaagtctcttgaatcaccattgttaactgca |
25197527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 10603 - 10320
Alignment:
| Q |
25 |
atgctgtcctaaacatacacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttctggattg |
124 |
Q |
| |
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|||||||||| ||| ||||||| || |||||||||||||| ||| |||||||||||||||| |||| | |||| ||||||||||||||||| |||||| |
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| T |
10603 |
atgctgtcctggacagacacgagaaccgattccaaatggcatataagcttgtggaatcttgcaggctctaagcacaccatttgcaaatctttcaggattg |
10504 |
T |
|
| Q |
125 |
aacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaat |
224 |
Q |
| |
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|||| |||||||| ||||||| || ||| || ||||||||||| |||||||| |||| ||||||||||||||||| || ||||||||| | | |
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| T |
10503 |
aactcgtgtgcatcggccccccaaatatcaatgtcatgctgcaatattgggattggaatctgaatattcattccttttggaactttgataccttttatgt |
10404 |
T |
|
| Q |
225 |
taatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcaccattgttaactgca |
308 |
Q |
| |
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|||| |||| ||||| ||| | ||| |||||| |||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
10403 |
taatatcttggaaagctgttctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatcaccatggttaactgca |
10320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 53 - 308
Target Start/End: Complemental strand, 19208315 - 19208060
Alignment:
| Q |
53 |
attccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttctggattgaacttatgtgcatcatgtccccaaagct |
152 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||| | ||||| | | |
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| T |
19208315 |
attccaaatggcatataagcttgtggaatcttgcaggctccaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgggcccccagatat |
19208216 |
T |
|
| Q |
153 |
ctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaattaatgtcttcaaaagcctgtctaacaac |
252 |
Q |
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| T |
19208215 |
caatgtcttgttgcaatatcgcaattggaatctgcatattaattccttttggaactttgataccttttaaattaatatcttggaatgatgttctggtgat |
19208116 |
T |
|
| Q |
253 |
cgataatgctggtggataaagcctcaatgtctcttgaatcaccattgttaactgca |
308 |
Q |
| |
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||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19208115 |
aaatactgctggtggataaagcctcaaagtctcttgaatcaccatggttaactgca |
19208060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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