View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-14 (Length: 551)
Name: NF5103-Insertion-14
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-14 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 453 - 551
Target Start/End: Original strand, 15101054 - 15101152
Alignment:
| Q |
453 |
aaatatatttaatcattaatgttattgtaatgtgtgacgtggctcctagtgagtcagctatttattccattagcattgcagggattatccttttttatg |
551 |
Q |
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| T |
15101054 |
aaatatatctaatcattaatgttattgtgatgtgtgacgtggctcctagtgagtcagctatttattccattagcattgcagggattatccttttttatg |
15101152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 15100756 - 15100883
Alignment:
| Q |
36 |
aacaaaaattgagaacaaatttgttggtcaaattagttttgcatgtgaatcaannnnnnnctt---tcagttatttataacataataaattttagcattt |
132 |
Q |
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| T |
15100756 |
aacaaaaattgagaacaaatttgttggtcaaattacctttacatgttaatcaatttttttcttaagttatttaattacaacataataaatttcagcattt |
15100855 |
T |
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| Q |
133 |
ggatggagtgtgggaatttgaaatttta |
160 |
Q |
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| T |
15100856 |
ggatggagtgtaggaatttgaaatttta |
15100883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 15100924 - 15100994
Alignment:
| Q |
295 |
ttcaatgataaacaataaatagttgctacttgagtttggaagggttaatcagcaagtttgtgcgccaaaca |
365 |
Q |
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| T |
15100924 |
ttcaataacaaacattaaatagttggtacttgagtttggaagggttaatcagcaagtttttgcgccaaaca |
15100994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 15100876 - 15100924
Alignment:
| Q |
186 |
aaattttatagagaactctaattaagtaatcttgtctgcataaataaat |
234 |
Q |
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| T |
15100876 |
aaattttatagagaactctaattaagtaatcttctctgcataaataaat |
15100924 |
T |
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