View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-15 (Length: 518)
Name: NF5103-Insertion-15
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-15 |
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| [»] chr7 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 204 - 518
Target Start/End: Original strand, 8516506 - 8516820
Alignment:
| Q |
204 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8516506 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcgtt |
8516605 |
T |
|
| Q |
304 |
ttcatcgagttaagcggggcgaaccagatataggaatcaagttcaaactcgagtactggtacgtcgttctttttgacgtagctgtgccggtagctgtgct |
403 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8516606 |
ttcatcgagttaagcggggcgaaccagaaataggaatcaagttcaaactcgagtactagtacgtcgttctttttgacgtagctgtgccggtagctgtgct |
8516705 |
T |
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| Q |
404 |
tcagattggaacaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacat |
503 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8516706 |
tcagatcggaacaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacat |
8516805 |
T |
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| Q |
504 |
tctacagccataaag |
518 |
Q |
| |
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||||||||||||||| |
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| T |
8516806 |
tctacagccataaag |
8516820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 204 - 518
Target Start/End: Original strand, 8484705 - 8485019
Alignment:
| Q |
204 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8484705 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcgtt |
8484804 |
T |
|
| Q |
304 |
ttcatcgagttaagcggggcgaaccagatataggaatcaagttcaaactcgagtactggtacgtcgttctttttgacgtagctgtgccggtagctgtgct |
403 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8484805 |
ttcatcgagttaagcggggcgaaccagctataggaatcaagttcaaactcgaatactggtacgtcgttctttttgacgtagctgtgccggtatctgtgct |
8484904 |
T |
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| Q |
404 |
tcagattggaacaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacat |
503 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8484905 |
tcagatcggaacaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacat |
8485004 |
T |
|
| Q |
504 |
tctacagccataaag |
518 |
Q |
| |
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||||||||||||||| |
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| T |
8485005 |
tctacagccataaag |
8485019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 204 - 518
Target Start/End: Original strand, 8489701 - 8490015
Alignment:
| Q |
204 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcatt |
303 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8489701 |
tccaacaaccaaaataatctcataatgataaagaagtctagaaaataaaacacaaacgagttaagtgggtcgacccgccccatctcatgccttcctcgtt |
8489800 |
T |
|
| Q |
304 |
ttcatcgagttaagcggggcgaaccagatataggaatcaagttcaaactcgagtactggtacgtcgttctttttgacgtagctgtgccggtagctgtgct |
403 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8489801 |
ttcatcgagttaagcggggcgaaccagctataggaagcaagttcaaactcgaatactggtacgtcgttctttttgacgtagctgtgccggtagctgtgct |
8489900 |
T |
|
| Q |
404 |
tcagattggaacaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacat |
503 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8489901 |
tcagatcggaagaaagaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacat |
8490000 |
T |
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| Q |
504 |
tctacagccataaag |
518 |
Q |
| |
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||||||||||||||| |
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| T |
8490001 |
tctacagccataaag |
8490015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 8516309 - 8516441
Alignment:
| Q |
8 |
tatgaaacattgaacaaatcactttaccaagcttt-atccattttcgaatgtnnnnnnnnnnnnctatgttgcttttaaaaagcttttatcgtaagaaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8516309 |
tatgaaacattgaacaaatcactttaccaagcttttatccattttcgaatgtaaaaaaaaaaaactatgttgcttttaaaaagcttttatcgtaagaaaa |
8516408 |
T |
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| Q |
107 |
tataaaagaatagacagcaaacaaatttgttgt |
139 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8516409 |
tataaaagaatagacagcaaacaaatttgttgt |
8516441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 8489500 - 8489636
Alignment:
| Q |
8 |
tatgaaacattgaacaaatcactttaccaagcttt-atccattttcgaatgtnnnnnnnnnnnn----ctatgttgcttttaaaaagcttttatcgtaag |
102 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8489500 |
tatgaaacattgaacaaatcactttaccaagcttttatccattttcgaatgtaaaaaaaaaaaaaaaactatgttgcttttaaaaagcttttatcgtaag |
8489599 |
T |
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| Q |
103 |
aaaatataaaagaatagacagcaaacaaatttgttgt |
139 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8489600 |
aaaatataaaagaatagacagcaaacaaatttgttgt |
8489636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 8484506 - 8484637
Alignment:
| Q |
8 |
tatgaaacattgaacaaatcactttaccaagcttt-atccattttcgaatgtnnnnnnnnnnnn--ctatgttgcttttaaaaagcttttatcgtaagaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
8484506 |
tatgaaacattgaacaaatcactttagcaagcttttatccattttcgaatgtacaaaaaaaaaaaactatgttgcttttaccaagcttttatcgtaagaa |
8484605 |
T |
|
| Q |
105 |
aatataaaagaatagacagcaaacaaatttgt |
136 |
Q |
| |
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|||||||||||||||| | ||||||||||||| |
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| T |
8484606 |
aatataaaagaatagaaaacaaacaaatttgt |
8484637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 1525962 - 1525902
Alignment:
| Q |
458 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaag |
518 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||| || |||||| |||||||||||||| |
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| T |
1525962 |
tgtcagcagatttgtgatctcctaaggccgaaagtgcgcaatacatcctacagccataaag |
1525902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 15171275 - 15171215
Alignment:
| Q |
458 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaag |
518 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
15171275 |
tgtcagcagatttgtgatctcctgaggccaaaagtacgtgatacatactacagccataaag |
15171215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 29712330 - 29712270
Alignment:
| Q |
458 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaag |
518 |
Q |
| |
|
|||||||||||||||| || || | |||||||||||| |||||||| ||||| |||||||| |
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| T |
29712330 |
tgtcagcagatttgtgatcacctgtggccaaaagtacttgatacatactacaaccataaag |
29712270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 55803123 - 55803183
Alignment:
| Q |
458 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaag |
518 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||| | |||||| ||||| |||||||| |
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| T |
55803123 |
tgtcagcagatttgtgatctcctgcggccaaaagtactttatacatactacaaccataaag |
55803183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 55807711 - 55807771
Alignment:
| Q |
458 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaag |
518 |
Q |
| |
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|||||||||||||||| |||| | |||||||||||| |||||||| ||||| |||||||| |
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| T |
55807711 |
tgtcagcagatttgtgatctcttgtggccaaaagtacttgatacatactacaaccataaag |
55807771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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