View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5103-Insertion-16 (Length: 489)
Name: NF5103-Insertion-16
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-16 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 2771582 - 2772042
Alignment:
| Q |
8 |
ataactgagtaaattgtttcttgtatcagtatcaggttctccttgatgcagctcaaagatgacatatttctttatgtggtgcttcaattcaaataaaatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2771582 |
ataactgagtaaattgtttcttgtatcagtatcaggttctccttgatgcagctcaaagatgacatatttctttatatggtgcttcaattcaaataaaatc |
2771681 |
T |
|
| Q |
108 |
gttccttcgcatcctgcaacaatcaagaaaaatgtggattgcacgttggttttacttttctatttctgtcatttgtggtgtattataatttggatccata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2771682 |
gttccttcgcatcctgcaacaatcaagaaaaatgtggattccacgttggttttacttttctatttctgtcatttgtggtgtattataatttggatccata |
2771781 |
T |
|
| Q |
208 |
tctggactccattcagacgtcgttttgatatttctttcctacttttgacatttgtggtgtttaagactggtccctggtggtaataataataatcaaaact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2771782 |
tctggactccattcagacgtcgttttgatatttctttcctacttttgacatttgtggtgtttaaga-------ctggtggtaataataataatcaaaact |
2771874 |
T |
|
| Q |
308 |
acttcattcgaatgaatatgtttattttgctaaccaagcttgatgctactatcacaatctagctgtaactataaaggcccagttgatttgaagttaatcg |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2771875 |
acttcattcaaatgaatatgtttattttgctaaccaagcttgatgctactatcataatctagctgtaactataaaggcctagttgatttgaagttaatcg |
2771974 |
T |
|
| Q |
408 |
tgaggatatgtatgtatctcagccaaccggtttcatccatcatttcttcattaattggtctaaattggatcccgggcctggt |
489 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2771975 |
agaggatatgtatgtatc--------------tcatccatcatttcttcattaattggtctaaattggatcccgcgcctggt |
2772042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 287 - 448
Target Start/End: Complemental strand, 2834998 - 2834837
Alignment:
| Q |
287 |
gtaataataataatcaaaactacttcattcgaatgaatatgtttattttgctaaccaagcttgatgctactatcacaatctagctgtaactataaaggcc |
386 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| | | |||||||||||| || ||||||||| | |||| ||| |
|
|
| T |
2834998 |
gtaataataataatcaaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgctactatcgttatgtagctgtaaatttaaacgcc |
2834899 |
T |
|
| Q |
387 |
cagttgatttgaagttaatcgtgaggatatgtatgtatctcagccaaccggtttcatccatc |
448 |
Q |
| |
|
||||||||| |||| |||| || |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2834898 |
tagttgatttaaagtaaatctggacgatatgtatgcgtctcagccaaccggtttcatccatc |
2834837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 2794342 - 2794504
Alignment:
| Q |
299 |
atcaaaactacttcattcgaatgaatatgtttattttgctaaccaagcttgatgctactatcacaatctagctgtaactataaaggcccagttgatttga |
398 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| | |||||| |||||| ||||||||||||||| ||||| ||| |||||| ||| | |||||||| |
|
|
| T |
2794342 |
atcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgatgctactatcataatcttgctataactacaaataactgaatgatttga |
2794441 |
T |
|
| Q |
399 |
agttaatcgtgaggatatgtatgtatctcagccaaccggtttcatccatcatttcttcattaa |
461 |
Q |
| |
|
||||||| | ||||| ||| |||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
2794442 |
agttaattgagaggacatgaatgtgtctcagccaaccgctttcatccatcatctcttcattaa |
2794504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 446
Target Start/End: Original strand, 2821357 - 2821522
Alignment:
| Q |
291 |
taataataatcaaaactacttcattcgaatgaatatgtttattttgctaaccaagcttgatgcta------ctatcacaatctagctgtaactataaagg |
384 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| |||||||| ||||| |||| ||||||||| |||||| | | |||||||| | || | | |
|
|
| T |
2821357 |
taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgctaatgctgctatcattacccagctgtaaatttatatg |
2821456 |
T |
|
| Q |
385 |
cccagttgatttgaagttaatcgtgaggatatgtatgtat----ctcagccaaccggtttcatcca |
446 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2821457 |
cctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatcca |
2821522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 2793491 - 2793597
Alignment:
| Q |
42 |
ggttctccttgatgcagctcaaagatgacatatttctttatgtggtgcttcaattcaaa-taaaattgttccttcgcatcctgcaacaatcaagaaaaat |
140 |
Q |
| |
|
|||||| | |||| |||||| ||||||||||||||| || | || |||||||||| ||| |||||| ||||||| |||||||||| ||| |||||||| |
|
|
| T |
2793491 |
ggttcttcgtgatacagctccaagatgacatatttcgttctatgttgcttcaattaaaaataaaatgtttccttctcatcctgcaattatctagaaaaat |
2793590 |
T |
|
| Q |
141 |
gtggatt |
147 |
Q |
| |
|
||||||| |
|
|
| T |
2793591 |
gtggatt |
2793597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 2821275 - 2821309
Alignment:
| Q |
208 |
tctggactccattcagacgtcgttttgatatttct |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2821275 |
tctggactccattcagacgtctttttgatatttct |
2821309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 2800464 - 2800537
Alignment:
| Q |
205 |
atatctggactccattcagacgtcgttttgatatttctttcctacttttgacatttgtggtgtttaagactggt |
278 |
Q |
| |
|
|||| |||||||||||||||| || ||| || |||||||||| || |||| ||||| |||||||| ||| |||| |
|
|
| T |
2800464 |
atatttggactccattcagacatcatttggacatttctttccaacatttgccatttttggtgtttcagattggt |
2800537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University