View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5103-Insertion-18 (Length: 254)
Name: NF5103-Insertion-18
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 39052330 - 39052574
Alignment:
| Q |
8 |
attttctatttactattagcatagtagttaactaaagaactttattttccaacatgtctccctggctttggttgacaacaacactggcctatatgatttt |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39052330 |
attttctatttactattagcatagcagttaactaaagaactttattttccaacatgtctccctggctttggttgacaacaacactggcctatatgatttt |
39052429 |
T |
|
| Q |
108 |
tcatggaaaagaatctattataggtgaacaaattg----tattttaaagtttgattggatgcgtttttattttctttaaaaatcaaattaatccactgaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39052430 |
tcatggaaaagaatctattataggtgagcaaattggtaatattttaaagtttgattggatgcgtttttattttttttaaaaatcaaattaatccactgaa |
39052529 |
T |
|
| Q |
204 |
attgttattgaagataatcgaatgtgatattttacactttaagat |
248 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
39052530 |
attgttattgaagataatcgaacatgatactttacactttaagat |
39052574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University