View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-19 (Length: 284)
Name: NF5103-Insertion-19
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-19 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 29317723 - 29317633
Alignment:
| Q |
194 |
gagtttgtgtgattgcatactttgtatccatcggtgtattttcttccaaattgagtaatagagccgactcttaacacgtcttgttttgtta |
284 |
Q |
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| T |
29317723 |
gagtttgtgtgattgcatactttgtatccatcggtgtattttcttccaaattgagtaatagagccgactcttaacacgtcttgttctgtta |
29317633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 29317885 - 29317775
Alignment:
| Q |
42 |
ttgacattcataatactatttccggcacctgagtcggtgaaaagtgtggaa----------tttgggagttttgtttaagttgtttgtttattctctatc |
131 |
Q |
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| T |
29317885 |
ttgacattcattatactatttccggcacatgagtcggtgaaaagtgtggaaaagtgtggaatttgggagttttgtttaagttgtttgtttattctctatc |
29317786 |
T |
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| Q |
132 |
ttaattaccat |
142 |
Q |
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| T |
29317785 |
tcaattaccat |
29317775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 29318122 - 29318085
Alignment:
| Q |
8 |
ggaaagaaatttgttgttcacaagagatagagtcttga |
45 |
Q |
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| T |
29318122 |
ggaaagaaatttgttgttcacaagagatagagtcttga |
29318085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 29340655 - 29340600
Alignment:
| Q |
223 |
atcggtgtattttcttccaaattgagtaatagagccgactcttaacacgtcttgtt |
278 |
Q |
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| T |
29340655 |
atcgatgtattttcttccaaattgagtaatcgatccggctcttaacaagtcttgtt |
29340600 |
T |
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