View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5103-Insertion-2 (Length: 1200)

Name: NF5103-Insertion-2
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5103-Insertion-2
NF5103-Insertion-2
[»] chr8 (2 HSPs)
chr8 (8-500)||(38943553-38944054)
chr8 (895-1004)||(38944053-38944162)
[»] chr7 (2 HSPs)
chr7 (683-859)||(43415088-43415263)
chr7 (879-1004)||(43414972-43415098)
[»] chr1 (4 HSPs)
chr1 (682-855)||(29379200-29379367)
chr1 (896-1004)||(29379077-29379188)
chr1 (448-503)||(29409732-29409787)
chr1 (189-269)||(49363558-49363637)
[»] chr4 (2 HSPs)
chr4 (689-855)||(5460476-5460635)
chr4 (896-1004)||(5460647-5460758)
[»] chr3 (1 HSPs)
chr3 (474-620)||(30870622-30870768)
[»] chr5 (2 HSPs)
chr5 (453-523)||(36667808-36667878)
chr5 (448-532)||(27560311-27560396)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Original strand, 38943553 - 38944054
Alignment:
Q  8 aaaaccaagttaaacaattgagtgaaaaccgaactcactaagttggtgtttcaacagtaaacaatttggctattctcttttgaaagagttattgaaattc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38943553 aaaaccaagttaaacaattgagtgaaaactgaactcactaaattggtgtttcaacagttaacaatttggctattctcttttgaaagagttattgaaattc 38943652  T
Q  108 aaaatatgaaaaacagcattattttatcacttatctacactaacaaatatgaaattcaaaacacatgacgtgaattaattttgccaaaattaagtctctc 207  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||| || ||||||    
T  38943653 aaaatatgaaaagcaacattattttatcacttatctacactaacaaatatgaaattcaaaatacatgacgtggattagatttgccaaaatgaaatctctc 38943752  T
Q  208 aacacaaacagacagagaataaaatctgtgaattccctttgatttttactaatcccaacctcgatttctatctcatgttattcaaactcattatctagaa 307  Q
    ||||||||| | || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38943753 aacacaaacgggcaaagaacaaaatccgtgaattccctttgatttttactaatcccaacctcgatttctatctcatgttattcaaactcattatctataa 38943852  T
Q  308 ggtagaaaatgaaaataa---------aagtctccatgaaattgaatgctagttataaattataaataaatagataaatcaaataagctgaaatcatcac 398  Q
    ||||||||||||||| ||         |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38943853 ggtagaaaatgaaaacaaagatataataagtctccatgaaattcaatgctagttataaattataaataaatagataaatcaaataagctgaagtcatcac 38943952  T
Q  399 tttagggaaatcactttaaagtatttatcaaataagctagttataatacttcatcacacttgtttgcaaagctcttgagtttggttgtctgcttcaacac 498  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  38943953 tttagagaaatcattttaaagtgtttatcaaataagctagttataatactccatcacacttgtttgcaaagctcttgagtttggttgtctacttcaaaac 38944052  T
Q  499 aa 500  Q
    ||    
T  38944053 aa 38944054  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 895 - 1004
Target Start/End: Original strand, 38944053 - 38944162
Alignment:
Q  895 aatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttcttaaattgcataaattattctccatttttcatttgtagctataa 994  Q
    |||||||||||||||||||||||||||||||| |||||   | ||||| | ||||||  ||||||||||||||||||||||||||||| ||| |||||||    
T  38944053 aatgacttaaacaaataataagaggttctatggcataataactcaaacctgccttctcgaattgcataaattattctccatttttcatatgtggctataa 38944152  T
Q  995 attcataagt 1004  Q
    ||||||||||    
T  38944153 attcataagt 38944162  T

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Target: chr7 (Bit Score: 137; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 683 - 859
Target Start/End: Complemental strand, 43415263 - 43415088
Alignment:
Q  683 aagacgggtgaacttaagcttgttcctctattaagatcaacaattgtaaaagtcatcaatcatatttcttgtgtcatttacatatttgattgtgtcaaac 782  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||  || |||||||||||||||||||||| |||||| ||||||||    
T  43415263 aagacaggtgaacttaagctagttcctctattaagatcaacaattgtaaaagccatctttcttatttcttgtgtcatttacatacttgattttgtcaaac 43415164  T
Q  783 aaaattggtgttaagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt 859  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43415163 aaaattggtg-taagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaactttttaactt 43415088  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 879 - 1004
Target Start/End: Complemental strand, 43415098 - 43414972
Alignment:
Q  879 ctttttaacttcaaa-taatgacttaaacaaataataagaggttctatgacataacttcccaaacattccttcttaaattgcataaattattctccattt 977  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||  | ||||| | |||||| ||||||||||||||  |||| ||||    
T  43415098 ctttttaacttcaaaatcatgacttaaacaaataataagaggttctatggcataacaactcaaacctgccttctcaaattgcataaattcatctcaattt 43414999  T
Q  978 ttcatttgtagctataaattcataagt 1004  Q
    ||||| |||| ||||||||||||||||    
T  43414998 ttcatatgtacctataaattcataagt 43414972  T

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Target: chr1 (Bit Score: 98; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 682 - 855
Target Start/End: Complemental strand, 29379367 - 29379200
Alignment:
Q  682 gaagacgggtgaacttaagcttgttcctctattaagatcaacaattgtaaaagtcatcaatcatatttcttgtgtcatttacat-atttgattgtgtcaa 780  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||        ||  || ||||||||||||||||||||| |||||||||||||||    
T  29379367 gaagacaggtgaacttacgcttgttcctctattaagatcaacaattgtt-------tctttcttatttcttgtgtcatttacattatttgattgtgtcaa 29379275  T
Q  781 acaaaattggtgttaagtaaaaa-gtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 855  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29379274 acaaaattggtat-aagtaaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 29379200  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 896 - 1004
Target Start/End: Complemental strand, 29379188 - 29379077
Alignment:
Q  896 atgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttcttaaattgcataaattattctccatttttcatttgtagctat 992  Q
    |||||||| |||||||||||||||||||||| ||||||  |    ||||||| |||||| |||||||||||||| ||||||||||||||| |||| ||||    
T  29379188 atgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctccatttttcatatgtacctat 29379089  T
Q  993 aaattcataagt 1004  Q
    |||||| |||||    
T  29379088 aaattcgtaagt 29379077  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 448 - 503
Target Start/End: Original strand, 29409732 - 29409787
Alignment:
Q  448 ttcatcacacttgtttgcaaagctcttgagtttggttgtctgcttcaacacaaagg 503  Q
    |||| |||| |||||||||||||||||||||| | ||||||||||||| |||||||    
T  29409732 ttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaacaaagg 29409787  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 49363558 - 49363637
Alignment:
Q  189 tgccaaaattaagtctctcaacacaaacag-acagagaataaaatctgtgaattccctttgatttttactaatcccaacctc 269  Q
    |||||| |||||||||| ||||||||  || |||||| |  ||||||||||||||||||||||||||||  |||||||||||    
T  49363558 tgccaatattaagtctcccaacacaaggaggacagagca--aaatctgtgaattccctttgatttttacgtatcccaacctc 49363637  T

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Target: chr4 (Bit Score: 94; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 689 - 855
Target Start/End: Original strand, 5460476 - 5460635
Alignment:
Q  689 ggtgaacttaagcttgttcctctattaagatcaacaattgtaaaagtcatcaatcatatttcttgtgtcatttacat-atttgattgtgtcaaacaaaat 787  Q
    |||||||||| ||||||||||||||||||||||||||||||        ||  || ||||||| ||||||||||||| |||||||||||||||||||||     
T  5460476 ggtgaacttacgcttgttcctctattaagatcaacaattgtt-------tctttcttatttctcgtgtcatttacattatttgattgtgtcaaacaaaac 5460568  T
Q  788 tggtgttaagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 855  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5460569 tggtat-aagtaaaaagtcaaagttctactaacttaaataaacaatgaaacattgagacaacttttta 5460635  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 896 - 1004
Target Start/End: Original strand, 5460647 - 5460758
Alignment:
Q  896 atgacttaaacaaataataagaggttctatgacataacttcc---caaacattccttcttaaattgcataaattattctccatttttcatttgtagctat 992  Q
    |||||||| |||||||||||||||||||||| ||||||  |    ||||||| |||||| |||||||||||||| ||||||||||||||| |||| ||||    
T  5460647 atgacttatacaaataataagaggttctatggcataacaacaactcaaacatgccttctcaaattgcataaattcttctccatttttcatatgtacctat 5460746  T
Q  993 aaattcataagt 1004  Q
    |||||| |||||    
T  5460747 aaattcgtaagt 5460758  T

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Target: chr3 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 474 - 620
Target Start/End: Original strand, 30870622 - 30870768
Alignment:
Q  474 tgagtttggttgtctgcttcaacacaaagggatcaataaattttaatgctaaaaagtatatgcggtactaactcaaggagaagtgtaaaagacctctaaa 573  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||| || ||||||| |||||||| | | ||| ||||| | | ||    
T  30870622 tgagtttgattgtctgcttcaaaacaa-gggatcaataaatcttaatgctaaaaagtatgtgtggtactatctcaaggacaggcgtagaagacttttgaa 30870720  T
Q  574 attcataattgaaattttatttttgttt---gtatgaggaaattgacatg 620  Q
    ||||||| | |||  |||||||||||||   |||||||||||| ||||||    
T  30870721 attcatattggaa--tttatttttgtttgtagtatgaggaaatagacatg 30870768  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 453 - 523
Target Start/End: Original strand, 36667808 - 36667878
Alignment:
Q  453 cacacttgtttgcaaagctcttgagtttggttgtctgcttcaacacaaagggatcaataaattttaatgct 523  Q
    |||| |||||||||| ||||||||||| | ||||||||||||| ||||||| |||||||||  ||||||||    
T  36667808 cacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgct 36667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 448 - 532
Target Start/End: Original strand, 27560311 - 27560396
Alignment:
Q  448 ttcatcacacttgtttgcaaagctcttgagtttggttgtctgcttcaacacaaagggatcaataaattttaatgc-taaaaagtat 532  Q
    |||| |||| ||| ||| || ||||||||||| | ||||||||||||| ||||||| |||||||||  ||||||| ||||||||||    
T  27560311 ttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtat 27560396  T

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