View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5103-Insertion-3 (Length: 946)

Name: NF5103-Insertion-3
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5103-Insertion-3
NF5103-Insertion-3
[»] chr1 (15 HSPs)
chr1 (8-913)||(23681538-23682444)
chr1 (8-900)||(19567336-19568219)
chr1 (566-767)||(43908125-43908326)
chr1 (65-183)||(43907624-43907742)
chr1 (339-429)||(43986639-43986729)
chr1 (69-183)||(44005465-44005579)
chr1 (646-750)||(43902280-43902384)
chr1 (339-429)||(44005213-44005303)
chr1 (563-625)||(43986434-43986496)
chr1 (469-522)||(43902153-43902206)
chr1 (339-378)||(42414390-42414429)
chr1 (249-308)||(43917202-43917261)
chr1 (69-183)||(43986891-43987005)
chr1 (563-596)||(43917513-43917546)
chr1 (852-892)||(44004771-44004812)
[»] chr8 (6 HSPs)
chr8 (563-769)||(42694112-42694321)
chr8 (251-319)||(42699790-42699858)
chr8 (355-517)||(42693898-42694060)
chr8 (104-194)||(42699650-42699745)
chr8 (792-834)||(42694344-42694386)
chr8 (563-600)||(24042045-24042082)
[»] chr4 (6 HSPs)
chr4 (339-429)||(45078139-45078229)
chr4 (147-420)||(45089470-45089743)
chr4 (693-769)||(45089082-45089158)
chr4 (630-666)||(45089200-45089236)
chr4 (147-204)||(45078364-45078421)
chr4 (570-619)||(45089271-45089320)
[»] chr7 (1 HSPs)
chr7 (62-194)||(41682135-41682267)
[»] chr2 (1 HSPs)
chr2 (563-600)||(24002049-24002086)


Alignment Details
Target: chr1 (Bit Score: 828; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 8 - 913
Target Start/End: Original strand, 23681538 - 23682444
Alignment:
Q  8 gaaaccaccgtcaagaacgaacagcctcttcctccgaccgccggcgacgaagcacctgttttgccggaagaagtcatcttcgatatccttctgaggcttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23681538 gaaaccaccgtcaagaacgaacagcctcttcctccgaccgccggcgacgaagcacctgttttgccggaagaagtcaacttcgatatccttctgaggcttc 23681637  T
Q  108 ctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctgatttccaatcctcaattcgcaaagagccatcttctctgctcaacatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  23681638 ctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctaatttccaatcctcaattcgcaaagagccatcttctcagctcaacatc 23681737  T
Q  208 gtatccacaattattcacttccgctgtcaaaatcggagaccgtgaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgttgaa 307  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23681738 gtatccacaattattcacttccgcagtcaaaatcggagaccgtgaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgttgaa 23681837  T
Q  308 cccgttactataaccatgagacacaaatacaatattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtgga 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23681838 cccgttactataaccatgagacacaaatacaatattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtgta 23681937  T
Q  408 atccttctatcaacttcaaatcgaacagatttccaattgttgcttcgttccataataagattatcacacatcatggttttgggtatgatcaagtgaatga 507  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23681938 atccttctatcaaattgaaatcgaacggatttccaattgttgcttcgttcgataataagattatcacacatcatggttttgggtatgatcaagtgaatga 23682037  T
Q  508 taagtacaagttgttagttgttgtacttaataaggatgattttagtgaaaaagttaccagaatttatacttttggtgaaaattcttggacaacggtttca 607  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23682038 taagtacaagttgttagttgttgtactcaataaggatgattttagtgaaaaagttaccagaatttatacttttggtgaaaattcttggacaacggtttca 23682137  T
Q  608 aatttcccgtgtaatcctggtatgtggttagggaagtttgtgagtggcactttgaattgaatcattaatgaaggtggtgttaattctaatcaacgggtga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23682138 aatttcccgtgtaatcctggtatgtggttagggaagtttgtgagtggcactttgaattggatcattaatgaaggtggtgttaattctaatcaacgggtga 23682237  T
Q  708 ttctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctccacacgatggtaacagattttgcaattctatgatgtatgttttgagtaa 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  23682238 ttctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctcaacatgatggtaacagattttgcaatcctatgatgtatgttttgagtaa 23682337  T
Q  808 ttgcctttgtgtgtgttgtgatcactcagaaactcatttgggccgtgtggataatgaaagagtatggagttgctgag-catggactgtattgacgatc-t 905  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  23682338 ttgcctttgtgtgtgttgtgatcactcagaaactcattt-ggccgtgtggataatgaaagagtatggagttgctgagtcatggactgtattgacgatcat 23682436  T
Q  906 ccctcgtg 913  Q
    ||||||||    
T  23682437 ccctcgtg 23682444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 900
Target Start/End: Complemental strand, 19568219 - 19567336
Alignment:
Q  8 gaaaccaccgtcaagaacgaacagcctcttcctccgaccgccggcgacgaagcacctgttttgccggaagaagtcatcttcgatatccttctgaggcttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  19568219 gaaaccaccgtcaagaacgaacagcctcttcctccgaccg---gcgacgaagcacctattttgccggaagaagtcctcttcgacatccttctgaggcttc 19568123  T
Q  108 ctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctgatttccaatcctcaattcgcaaagagccatcttctctgctca---ac 204  Q
    | ||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||| ||| | |||||| |||||| ||| ||||||  ||||   ||    
T  19568122 cggtgagatcccttctccaattaaagctcgtttgcaaatcatggaaaaccctaatttctaattcacaattcacaaagacccaccttctcacctcatcaac 19568023  T
Q  205 atcgtatccacaattattcacttccgctgtcaaaatcggagaccgtgaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgtt 304  Q
    | | ||||||||||| ||| ||   |  | |         |||||||||||  ||| |||  || |||||||||||||||||||||||||||||| ||||    
T  19568022 agcttatccacaattgttctct---ggagac---------gaccgtgaaatagtatgttatgctgtgaagccattgttggaaaatccatcaacccttgtt 19567935  T
Q  305 gaacccgttactataaccatgagacacaaatacaatattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgt 404  Q
     ||||||||||||||  |||||  |||| ||||  |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  19567934 caacccgttactataggcatgacgcacagatacggtattctaggttcgtgcaatgggttactttgtttgtatgatgattctcaatctaatttcagattgt 19567835  T
Q  405 ggaatccttctatcaacttcaaatcgaacagatttccaattgttgcttcgttccataataagattatcacacatcatggttttgggtatgatcaagtgaa 504  Q
    |||||||||  |||||||| |||||| | | |||||||||||||||||| ||  |||| ||| || | ||| ||||||||||||| ||||||||||| ||    
T  19567834 ggaatcctttgatcaacttgaaatcggatacatttccaattgttgcttcttttgataaaaagcttgttacatatcatggttttggctatgatcaagtcaa 19567735  T
Q  505 tgataagtacaagttgttagttgttgtacttaataaggatgattttagtgaaaaagttaccagaatttatacttttggtgaaaattcttggacaacggtt 604  Q
    ||| |||||||||||| || || ||||||  ||| |||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||  ||    
T  19567734 tgacaagtacaagttgctactttttgtacacaatcaggatgattttactgaaagaattaccagaatttatacctttggtgaaaattcttggacaacactt 19567635  T
Q  605 tcaaatttcccgtgtaatcctggtatgtggttagggaagtttgtgagtggcactttgaattgaatcattaatgaaggtggtgttaattctaatcaacggg 704  Q
      |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||| ||  ||| | ||  || ||||||||| ||||||||||    
T  19567634 caaaatttcccgagttatcctagtatgtggtcagggaagtttgtgagtggcactttgaattggatagttagtaaaaatgctgttaattccaatcaacggg 19567535  T
Q  705 tgattctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctccacacgatggtaacagattttgcaattctatgatgtatgttttgag 804  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| || |  ||||| || |||| ||||||||||||||    
T  19567534 tgattctttcggttgatcttgagaaagagacttatggggaactgttgcttcctcaacatgatggttaccgtgtttgcgatcctatcatgtatgttttgag 19567435  T
Q  805 taattgcctttgtgtgtgttgtg---atcactcagaaactcatttgggccgtgtggataatgaaagagtatggagttgctgag-catggactgtattgac 900  Q
    ||| || ||||||||||||| ||   ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  19567434 taactgtctttgtgtgtgttctgataatcactcggaaactcattt-ggctgtgtggataatgaaagagtatggagttgctgagtcatggactatattgac 19567336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 566 - 767
Target Start/End: Original strand, 43908125 - 43908326
Alignment:
Q  566 agaatttatacttttggtgaaaattcttggacaacggtttcaaatttcccgtgtaatcctggtatgtggttagggaagtttgtgagtggcactttgaatt 665  Q
    ||||||||||| ||||||||||||||||||| | |  || ||||||||||||||  ||||  || | | ||||||   | ||||||||||||||||||||    
T  43908125 agaatttatacctttggtgaaaattcttggaaatctcttccaaatttcccgtgtcttcctcataggggtttaggggtatatgtgagtggcactttgaatt 43908224  T
Q  666 gaatcattaatgaaggtggtgttaattctaatcaacgggtgattctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctccacacga 765  Q
    | ||  ||  | ||| |||||| |||||||||||| | |||||| ||||  |||||||||||||||| | ||| || ||||||||||| |||| ||| ||    
T  43908225 ggatagttgctaaagatggtgtcaattctaatcaatgtgtgattatttccattgatcttgagaaagaaaattacggggaagtgttgctacctcaacatga 43908324  T
Q  766 tg 767  Q
    ||    
T  43908325 tg 43908326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 43907624 - 43907742
Alignment:
Q  65 gttttgccggaagaagtcatcttcgatatccttctgaggcttcctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctgattt 164  Q
    ||||||||||||||| ||||| |||| |||||| |||||||||| |||| ||||||| ||||||  ||||| |||| |||||||||||||||||| || |    
T  43907624 gttttgccggaagaactcatcgtcgagatccttttgaggcttccggtgaaatcccttgtccaatacaagtgtgtttgcaaatcatggaaaaccctaatct 43907723  T
Q  165 ccaatcctcaattcgcaaa 183  Q
    |  || | |||||||||||    
T  43907724 ctgattcccaattcgcaaa 43907742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 43986729 - 43986639
Alignment:
Q  339 atattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtggaatccttctatcaacttcaaatc 429  Q
    ||||||||||||| |||||||| ||| ||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| || |||||    
T  43986729 atattctaggttcatgcaatggtttgatttgtttgtatgatattcatcaatctaatttcacattgtggaatccttctatcaatttgaaatc 43986639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 44005579 - 44005465
Alignment:
Q  69 tgccggaagaagtcatcttcgatatccttctgaggcttcctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctgatttccaa 168  Q
    ||||||||||| ||||| | ||||||||| ||| |||||| ||||||||||| || ||||  |||||||||| |||||| ||||||||||| || || ||    
T  44005579 tgccggaagaactcatcgttgatatccttttgaagcttccggtgagatccctccttcaatgtaagtgcgtttgcaaatcttggaaaaccctaatctctaa 44005480  T
Q  169 tcctcaattcgcaaa 183  Q
    ||| |||||| ||||    
T  44005479 tccccaattcacaaa 44005465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 646 - 750
Target Start/End: Original strand, 43902280 - 43902384
Alignment:
Q  646 tgtgagtggcactttgaattgaatcattaatgaaggtggtgttaattctaatcaacgggtgattctttcggttgatcttgagaaagagacttatggcgaa 745  Q
    ||||||||| ||||||||||| || |||  | ||| ||| || |||||||||||||  |||||| |||| ||||||||||||||||||||||| || |||    
T  43902280 tgtgagtggtactttgaattggataattgcttaagatggcgtcaattctaatcaacttgtgattatttccgttgatcttgagaaagagacttacggggaa 43902379  T
Q  746 gtgtt 750  Q
    |||||    
T  43902380 gtgtt 43902384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 44005303 - 44005213
Alignment:
Q  339 atattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtggaatccttctatcaacttcaaatc 429  Q
    ||||||| ||||| || ||||||||||||||||||||||||  || ||||  |||||||| ||| ||||||||||||||||| || |||||    
T  44005303 atattcttggttcatgtaatgggttgctttgtttgtatgatatttatcaacataatttcacattatggaatccttctatcaatttgaaatc 44005213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 625
Target Start/End: Complemental strand, 43986496 - 43986434
Alignment:
Q  563 accagaatttatacttttggtgaaaattcttggacaacggtttcaaatttcccgtgtaatcct 625  Q
    |||||||| ||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||    
T  43986496 accagaatatatacctttggtgaaaattcttgcacaactgttccaaatttcccgtgtgatcct 43986434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 522
Target Start/End: Original strand, 43902153 - 43902206
Alignment:
Q  469 tatcacacatcatggttttgggtatgatcaagtgaatgataagtacaagttgtt 522  Q
    ||||||||||||||||||||| ||||||||||| || |||||||| ||| ||||    
T  43902153 tatcacacatcatggttttggttatgatcaagttaacgataagtataaggtgtt 43902206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 42414390 - 42414429
Alignment:
Q  339 atattctaggttcgtgcaatgggttgctttgtttgtatga 378  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  42414390 atattctaggttcatgcaatggattgctttgtttgtatga 42414429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 43917202 - 43917261
Alignment:
Q  249 gtgaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgttgaac 308  Q
    |||||||  |||| |||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  43917202 gtgaaataatatcataccctatcaagccattgttggaaaacccaacaacccctgctgaac 43917261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 43987005 - 43986891
Alignment:
Q  69 tgccggaagaagtcatcttcgatatccttctgaggcttcctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctgatttccaa 168  Q
    ||||| ||||| ||||| | || |||||| |||| ||||| |||| |||||| || ||||| || ||| ||| |||||||||||||||||| || ||  |    
T  43987005 tgccgaaagaactcatcattgagatccttttgagacttccggtgaaatccctgcttcaattcaaatgcatttgcaaatcatggaaaaccctaatctcaga 43986906  T
Q  169 tcctcaattcgcaaa 183  Q
     || |||||||||||    
T  43986905 cccacaattcgcaaa 43986891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 43917513 - 43917546
Alignment:
Q  563 accagaatttatacttttggtgaaaattcttgga 596  Q
    |||||||||||||| |||||||||||||||||||    
T  43917513 accagaatttatacatttggtgaaaattcttgga 43917546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 852 - 892
Target Start/End: Complemental strand, 44004812 - 44004771
Alignment:
Q  852 gtgtggataatgaaagagtatggagttgctgag-catggact 892  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  44004812 gtgtggatgatgaaagagtatggagttgctgagtcatggact 44004771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 563 - 769
Target Start/End: Original strand, 42694112 - 42694321
Alignment:
Q  563 accagaatttatacttttggtgaaaattcttggacaacggtttcaaatttcccgtgtaatcctggtatgtggttagggaagtttgtgagtggcactttga 662  Q
    |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||  | ||  ||  | |||||| |||||| |||||||||||||||||||    
T  42694112 accagaatttatacctttggtgaaaattcttggaaaactgttccaaatttcccaggaaagtctcatgtgtggtcagggaaatttgtgagtggcactttga 42694211  T
Q  663 attgaatcattaatgaagg---tggtgttaattctaatcaacgggtgattctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctcc 759  Q
    ||||  |  ||||| || |   ||||| |||||||| |||| ||| |||||||||  ||||||||| ||| ||||||| | ||||||||||||||||||     
T  42694212 attggttggttaataaaagagctggtggtaattctagtcaaagggggattctttcctttgatcttgggaaggagacttttcgcgaagtgttgcttcctca 42694311  T
Q  760 acacgatggt 769  Q
    ||| ||||||    
T  42694312 acatgatggt 42694321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 42699790 - 42699858
Alignment:
Q  251 gaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgttgaacccgttactata 319  Q
    |||||| |||||||| || |||||||| || || |||| ||||||||||||||||||||||||| ||||    
T  42699790 gaaatcatatcttacactgtgaagccactgctgaaaaacccatcaacccctgttgaacccgttattata 42699858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 355 - 517
Target Start/End: Original strand, 42693898 - 42694060
Alignment:
Q  355 caatgggttgctttgtttgtatgat-tcttctcaatctaatttcagattgtggaatccttctatcaacttcaaatcgaacagatttccaattgttgcttc 453  Q
    |||||| |||||||||||||||||| ||  | |||| |||||||| ||||||||||||||||||||| || |||||  | | || |||||    || ||     
T  42693898 caatggtttgctttgtttgtatgatgtcagc-caatttaatttcacattgtggaatccttctatcaatttgaaatccgaaacatctccaaccaatgtttt 42693996  T
Q  454 gttccataataagattatcacacatcatggttttgggtatgatcaagtgaatgataagtacaag 517  Q
    ||   || ||||| |||| ||| ||||||||||||| |||||||| || |||||||||||||||    
T  42693997 gtctgattataagtttatgacatatcatggttttggctatgatcatgttaatgataagtacaag 42694060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 42699650 - 42699745
Alignment:
Q  104 cttcctgtgagatcccttctccaattaaagtgcgtttccaaatcatgg-----aaaaccctgatttccaatcctcaattcgcaaagagccatcttc 194  Q
    ||||||||||||||||| || ||||| || || |||| ||||||||||     |||||||  || ||| ||||||| |||||||||||||||||||    
T  42699650 cttcctgtgagatccctccttcaatttaaatgtgtttgcaaatcatggaatggaaaacccgaatatccgatcctcagttcgcaaagagccatcttc 42699745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 792 - 834
Target Start/End: Original strand, 42694344 - 42694386
Alignment:
Q  792 tgtatgttttgagtaattgcctttgtgtgtgttgtgatcactc 834  Q
    |||||||||||||||| ||||||||||| |||| |||||||||    
T  42694344 tgtatgttttgagtaactgcctttgtgtttgttttgatcactc 42694386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 24042082 - 24042045
Alignment:
Q  563 accagaatttatacttttggtgaaaattcttggacaac 600  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  24042082 accataatttatacctttggtgaaaattcttggacaac 24042045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 45078229 - 45078139
Alignment:
Q  339 atattctaggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtggaatccttctatcaacttcaaatc 429  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  45078229 atattataggttcatgcaatgggttgctttgtttgcatgattcctctcgattcaatttcagattgtggaatccttctatcaacttcgaatc 45078139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 147 - 420
Target Start/End: Complemental strand, 45089743 - 45089470
Alignment:
Q  147 catggaaaaccctgatttccaatcctcaattcgcaaagagccatcttctctgctcaacatcgtatccacaattattcacttccgctgtcaaaatcggaga 246  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||||  |||||||  || ||| ||||||| || |||||  | ||    | | | |    
T  45089743 catggaaaaccctaatctccaatccccaatttgcaaagagccatcttctgagctcaaccccgcatctacaattaatctcttcctttctcggtcttgcaaa 45089644  T
Q  247 ccgtgaaatcctatcttaccctatgaagccattgttggaaaatccatcaacccctgttgaacccgttactataaccatgagacacaaataca-atattct 345  Q
    | | |||||| | ||||||||| |||||||| | ||||||| ||||||||| | |||| ||||||||| | |||    || ||   || ||| ||||| |    
T  45089643 cagagaaatcgtgtcttaccctttgaagccactcttggaaattccatcaactcgtgttaaacccgttattttaagatcga-actgcaacacacatattat 45089545  T
Q  346 aggttcgtgcaatgggttgctttgtttgtatgattcttctcaatctaatttcagattgtggaatccttctatcaa 420  Q
    |||||| ||||||||||||||||||||| ||||||| | || |||| |||||||||||||||| |||||||||||    
T  45089544 aggttcatgcaatgggttgctttgtttgcatgattcctttcgatcttatttcagattgtggaacccttctatcaa 45089470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 769
Target Start/End: Complemental strand, 45089158 - 45089082
Alignment:
Q  693 ctaatcaacgggtgattctttcggttgatcttgagaaagagacttatggcgaagtgttgcttcctccacacgatggt 769  Q
    ||||||||  ||||||| ||||  || || ||||||||||||||||||| ||||||||||| |||| ||| ||||||    
T  45089158 ctaatcaaaaggtgattatttcctttaatgttgagaaagagacttatggtgaagtgttgctgcctcaacatgatggt 45089082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 630 - 666
Target Start/End: Complemental strand, 45089236 - 45089200
Alignment:
Q  630 tgtggttagggaagtttgtgagtggcactttgaattg 666  Q
    ||||||||||||| |||||||||||||||||||||||    
T  45089236 tgtggttagggaaatttgtgagtggcactttgaattg 45089200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 45078421 - 45078364
Alignment:
Q  147 catggaaaaccctgatttccaatcctcaattcgcaaagagccatcttctctgctcaac 204  Q
    ||||||||||||| || || ||||||||||| ||||||| |||||||||  |||||||    
T  45078421 catggaaaaccctaatctctaatcctcaatttgcaaagaaccatcttctgagctcaac 45078364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 619
Target Start/End: Complemental strand, 45089320 - 45089271
Alignment:
Q  570 tttatacttttggtgaaaattcttggacaacggtttcaaatttcccgtgt 619  Q
    |||||||||||||||||||||||| ||||||  ||  |||||||||||||    
T  45089320 tttatacttttggtgaaaattcttagacaactattcaaaatttcccgtgt 45089271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 41682267 - 41682135
Alignment:
Q  62 cctgttttgccggaagaagtcatcttcgatatccttctgaggcttcctgtgagatcccttctccaattaaagtgcgtttccaaatcatggaaaaccctga 161  Q
    ||||| |||||||||||| ||||| | || ||||| || || ||||| ||||  ||||| || ||||| | |||||| |||||||||||||||||||| |    
T  41682267 cctgtcttgccggaagaactcatccttgagatcctcctcagacttccagtgacttccctccttcaatttatgtgcgtgtccaaatcatggaaaaccctaa 41682168  T
Q  162 tttccaatcctcaattcgcaaagagccatcttc 194  Q
    | ||    |||||||||||||||| ||||||||    
T  41682167 tctcatgacctcaattcgcaaagacccatcttc 41682135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 24002049 - 24002086
Alignment:
Q  563 accagaatttatacttttggtgaaaattcttggacaac 600  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  24002049 accataatttatacctttggtgaaaattcttggacaac 24002086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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