View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-4 (Length: 297)
Name: NF5103-Insertion-4
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 24129673 - 24129973
Alignment:
| Q |
8 |
atatgtatattgtatttcgtttagcatatttacatgcaacaatgcatgcatgttagatgtactactc-----------agtaccgggagagnnnnnnnnn |
96 |
Q |
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| T |
24129673 |
atatgtatattgtatttcgtttagcatatttacatgcaacaatgtgtgcatgttagatgtactagtcgatcaatacatagtaccgggagagtttttcttt |
24129772 |
T |
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| Q |
97 |
nnnnggtggaaactgcttgactcttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactg |
196 |
Q |
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| T |
24129773 |
ttttggtggaaactgcttgactcttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactg |
24129872 |
T |
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| Q |
197 |
ctatagtggattaggttaatctggtagccacatattagtcaattttaagtgtaagccgaatttgacagcaataatggtaatactatcagtcttgattttg |
296 |
Q |
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| T |
24129873 |
ctatagtggattaggttaatctggttgccacatattagtcaattttaagtgtaagccgaatttgacagcaataatggtaatactatcagtcttgattttg |
24129972 |
T |
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| Q |
297 |
a |
297 |
Q |
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| T |
24129973 |
a |
24129973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 24147793 - 24147961
Alignment:
| Q |
101 |
ggtggaaactgcttgactcttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactgctat |
200 |
Q |
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| T |
24147793 |
ggtggaaactgcttcactcttttgaaaatgtttcagggaatgaagctttgtaactgctatag-tggaataggttaaggactgaagctatgtaacttctac |
24147891 |
T |
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| Q |
201 |
agtggattaggttaatctggtagccacatattagtcaattttaagtgtaagccgaatttgacagcaataatg |
272 |
Q |
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| T |
24147892 |
agtggactaggttaatcttcttagcacatattagtcaattttaa--gtaaaccgaatttgacaacaataatg |
24147961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 24147692 - 24147748
Alignment:
| Q |
8 |
atatgtatattgtatttcgtttagcatatttacatgcaacaatgcatgcatgttaga |
64 |
Q |
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| T |
24147692 |
atatgtatattgtatttcatttagcatgtttaaatgcaacaatgcatgcatgctaga |
24147748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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