View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-5 (Length: 303)
Name: NF5103-Insertion-5
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 39294100 - 39293807
Alignment:
| Q |
8 |
caaggtccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtg |
107 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39294100 |
caaggtccattatgaaaggcctcgcaagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtg |
39294001 |
T |
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| Q |
108 |
gatcaagtgttggaaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatgannnnnnn |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39294000 |
gatcaagtgttggaaatgttttccctgaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgattttttt |
39293902 |
T |
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| Q |
208 |
cggcactcctatgaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttata |
302 |
Q |
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| T |
39293901 |
gggcactcctatgaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttata |
39293807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 35212746 - 35212811
Alignment:
| Q |
34 |
agctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccc |
99 |
Q |
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|||||| || |||||||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
35212746 |
agctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
35212811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 8357626 - 8357919
Alignment:
| Q |
8 |
caaggtccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357626 |
caaggtccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtg |
8357725 |
T |
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| Q |
108 |
gatcaagtgttggaaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatgannnnnnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8357726 |
gatcaagtgttggaaatgttttccctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgattttttt |
8357824 |
T |
|
| Q |
208 |
cggcactcctatgaaaggtttgaattataggccgttcttgataaagcctaatctcagttaaaaaacccgaatgaacccaggatagtttggttata |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8357825 |
gtgcactcctatgaaaggtttgaattataggccgttcttgacaaagcctaatctcagttaaaaaacccgaatgaacctaggatagtttggttata |
8357919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 44000181 - 44000373
Alignment:
| Q |
8 |
caaggtccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtg |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44000181 |
caaggtccattatcaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtg |
44000280 |
T |
|
| Q |
108 |
gatcaagtgttggaaatgttttccctgaaatcaaaagaaactccatgtttaatctaagagcgtaacttgttctcacttccattcaatacatga |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
44000281 |
gatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatga |
44000373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 26894437 - 26894376
Alignment:
| Q |
74 |
tcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctga |
135 |
Q |
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|||||||| |||||||||||||||||||| | |||||| | ||||||||||||||| ||||| |
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| T |
26894437 |
tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctga |
26894376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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