View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103-Insertion-8 (Length: 75)
Name: NF5103-Insertion-8
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103-Insertion-8 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 59; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 11699529 - 11699463
Alignment:
| Q |
9 |
tatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtctt |
75 |
Q |
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| T |
11699529 |
tatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctacttttagtctt |
11699463 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 11785771 - 11785704
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtctt |
75 |
Q |
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| T |
11785771 |
atatactcattggaacagttgcatttggatcatcaacaagaccatgctcttgtgctatctttagtctt |
11785704 |
T |
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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 11789358 - 11789291
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtctt |
75 |
Q |
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| T |
11789358 |
atatactcattggaacaattgcgtttggatcatcaacaagaccatgctcttgtgctatctttagtctt |
11789291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 11801525 - 11801458
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtctt |
75 |
Q |
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| T |
11801525 |
atatactcattggaacaattgcgtttggatcatcaacaagaccatgctcttgtgctatctttagtctt |
11801458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 11678345 - 11678289
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgcta |
64 |
Q |
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| T |
11678345 |
atatactcattggtacagttgcattaggatcatcaacaataccatattcttgtgcta |
11678289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 11686624 - 11686568
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgcta |
64 |
Q |
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| T |
11686624 |
atatactcattggtacagttgcattaggatcatcaacaataccatattcttgtgcta |
11686568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 11708983 - 11708939
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccat |
52 |
Q |
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| T |
11708983 |
atatactcattggtacagttgcattaggatcatcaacaagaccat |
11708939 |
T |
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Target: scaffold0294 (Bit Score: 44; Significance: 9e-17; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 20773 - 20706
Alignment:
| Q |
8 |
atatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtctt |
75 |
Q |
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||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| ||| |||||| |
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| T |
20773 |
atatactcattggtacagttgcatttggatcatcatcaagactatgctcttgtgctatctttagtctt |
20706 |
T |
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