View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_1 (Length: 650)
Name: NF5103_high_1
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 261 - 644
Target Start/End: Original strand, 39879790 - 39880173
Alignment:
| Q |
261 |
gtagggcatcacttaactgctcaacatgtaatttatggtgtttaaattaaagttttaaagtttatttgcttgcaagaaagtcaattctatttcacatggt |
360 |
Q |
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| T |
39879790 |
gtagggcatcacttaactgctcaacatgtaatttatggtgtttaaattaaagttttaaagtttatttgcttgcaagaaagtcaattctatttcacatggt |
39879889 |
T |
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| Q |
361 |
ttttagtttacctgtgaatttctagcagtattgaaatttaccttcagatttgcggttatggtttaaagcacaacaattgtattgtttccttcatcaccat |
460 |
Q |
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| T |
39879890 |
ttttagtttacctgtgaatttctagcagtattgaaatttaccttcagatttgcggttatggtttgaagcacaacaattgtattgttttcttcatcaccat |
39879989 |
T |
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| Q |
461 |
cgtattggtaatttagttcctgtgctcttgttgttgttgttattttgataacctcatttgtgaaatctgtaccagacagaggttacgactgtgatttgtg |
560 |
Q |
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| T |
39879990 |
cgtattggtaatttagttcctgtgctcttgttgttgttgttattttgataacctcatttgtgaaatctgtaccagacagaggttacgactgtgatttgtg |
39880089 |
T |
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| Q |
561 |
gccgcaaagaattgaaatcacttgtaaatattgctggacaactcgactctgtgaaacatgtgatatgtgttgacgatgatgtcc |
644 |
Q |
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| T |
39880090 |
gccgcaaagaattgaaatcacttgtaaatattgctggacaacttgactctgtgaaacgtgtgatatgtgttgacgatgatgtcc |
39880173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 39879546 - 39879734
Alignment:
| Q |
17 |
atgtcattttgaaaataattttatggacacctcattagatggcataatatgaatgatcggcacaaatctcttgagggcagtattaatactgagtttgcaa |
116 |
Q |
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| T |
39879546 |
atgtcattttgaaaataattttatggacacctcattagatggcataatatgaatgatcggcacaaatctcttgagggcagtattaatactgagtttgcaa |
39879645 |
T |
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| Q |
117 |
gttttgttgggaaaaaattaacaagtgttatagttcataggtacaccggggctttatttcttttccattttctctttaacaagttctcg |
205 |
Q |
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| T |
39879646 |
gttttgttgggaaaaaattaacaagtgatatagttcataggtacaccggggctttatttcttttccattttctctttaacaagttctcg |
39879734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 627
Target Start/End: Complemental strand, 10517199 - 10517105
Alignment:
| Q |
533 |
cagacagaggttacgactgtgatttgtggccgcaaagaattgaaatcacttgtaaatattgctggacaactcgactctgtgaaacatgtgatatg |
627 |
Q |
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| T |
10517199 |
cagacagaggtcacgaccgtaatttgtggacagaaagaattgaaaacacttgtaaatattagcggacaacttgactcagtgaaacgtgtgatatg |
10517105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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