View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_13 (Length: 305)
Name: NF5103_high_13
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 38943059 - 38943191
Alignment:
| Q |
13 |
tcatcaaaagacgaccttacacggggaccaagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaaatatagcacacacgtcacaa |
112 |
Q |
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| T |
38943059 |
tcatcaaaagacgaacttacacggggagcaagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaaatataacacacgcgtcacaa |
38943158 |
T |
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| Q |
113 |
caattgatatacaatgacatttacatcagaaaa |
145 |
Q |
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| T |
38943159 |
caattgatatacagtaacatctacatcagaaaa |
38943191 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 38943237 - 38943330
Alignment:
| Q |
151 |
acccattcttcaattgaagagcctcttgaatgtcaggattgatcaagagcctagttatattcatcacattatagacaaatgccttatctgcaac |
244 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
38943237 |
acccattcttcaattgaagagcctctggaatgtcaggattgatcaagagcctagttatattcatcacattctgcacaaatgccttatatgcaac |
38943330 |
T |
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