View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5103_high_26 (Length: 249)
Name: NF5103_high_26
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 3907818 - 3907678
Alignment:
| Q |
12 |
agaccatttgtgattccaattgctattttcatccttgttggccattcgatgatgatttctggtccacgagctgcaa--atatgtgtagaaatatcaatat |
109 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3907818 |
agaccattagtgattccaatagctattttcatccttgttggccattcgacgacaatttcaggtccacgagctgcaaatatatgtgcagaaatatcaatat |
3907719 |
T |
|
| Q |
110 |
tagatgtattgacttataaattgggagatgaaatatttgtt |
150 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3907718 |
cagatgtattaacttataaattaggagatgaaatatttgtt |
3907678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 3924102 - 3924039
Alignment:
| Q |
186 |
ataagtttcagattctcaggagtcacgaaaccacacaccaaacacaagtacgtgatatggacca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3924102 |
ataagtttcagattctcaggagtcacgaaaccacacgccaaacacaagtacgtgatatggacca |
3924039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 3907652 - 3907602
Alignment:
| Q |
134 |
gagatgaaatatttgttaactaataagattagctatgcattctaatttcaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3907652 |
gagatgaaatatttgttaactaataagactagctatgcattctaatttcaa |
3907602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 3923365 - 3923288
Alignment:
| Q |
100 |
atatcaatattagatgtattgacttataaattgggagatgaaatatttgttaactaataagattagctatgcattctaa |
178 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||| ||||| ||| | || |||||||||| ||||||| ||||||||||| |
|
|
| T |
3923365 |
atatcaatatcagaagtattggcttataaattaagagataaaagacttattaactaata-gattagcaatgcattctaa |
3923288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University