View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_28 (Length: 241)
Name: NF5103_high_28
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 36939460 - 36939604
Alignment:
| Q |
95 |
gtttgactcgattctgataaattattttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggcgcttc |
194 |
Q |
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| T |
36939460 |
gtttgactcgattctgataaattattttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggtgcttc |
36939559 |
T |
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| Q |
195 |
agagagtcctaaaaccataaagccattagtagctgcattgacttt |
239 |
Q |
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| T |
36939560 |
agagagtcctaagactataaggccattggtcgctgcattgacttt |
36939604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 36956061 - 36956178
Alignment:
| Q |
119 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaaccataaagcc |
218 |
Q |
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| T |
36956061 |
ttttgatttcattataggtgttggagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc |
36956160 |
T |
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| Q |
219 |
attagtagctgcattgac |
236 |
Q |
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| T |
36956161 |
gcttgtagctgcgttgac |
36956178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 36993649 - 36993769
Alignment:
| Q |
119 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaaccataaagcc |
218 |
Q |
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| T |
36993649 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
36993748 |
T |
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| Q |
219 |
attagtagctgcattgacttt |
239 |
Q |
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| T |
36993749 |
attagtggctgcgttgacttt |
36993769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 37019089 - 37019209
Alignment:
| Q |
119 |
ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggcgcttcagagagtcctaaaaccataaagcc |
218 |
Q |
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| T |
37019089 |
ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc |
37019188 |
T |
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| Q |
219 |
attagtagctgcattgacttt |
239 |
Q |
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| T |
37019189 |
attagtggctgcgttgacttt |
37019209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 36939243 - 36939318
Alignment:
| Q |
17 |
ataattacttacatttatctcttcatatagacatttatgtttatatatatgttttgatgtatgtgtaaaattcttgta |
94 |
Q |
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| T |
36939243 |
ataattactgacatttatctcttcatatagacatttatgtt--gatatatgttttgatgtatgtgtaaaattcttgta |
36939318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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