View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_30 (Length: 235)
Name: NF5103_high_30
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 3923763 - 3923984
Alignment:
| Q |
14 |
aatggttcagatcacaaaattgtgtttgacgtgtgatgttccgtaatgttccatattcacacaattacacatagtcactgataagtactgaaccgatgga |
113 |
Q |
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| T |
3923763 |
aatggttcagatcacaaaattgtgtttgacgtgtgatgttccgtaatgttccatattcacacaattacacatagttactgataagtaccgaactgatgga |
3923862 |
T |
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| Q |
114 |
tcaagagtagaaggcatatgttttgactttgtattatcattacagacttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtcca |
213 |
Q |
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| T |
3923863 |
tcaagagtagaaggcatatgttttgactttgtatcatcattacagacttgatttaccaaagttggaacttgaatttatctaatcaagatttaacggtcca |
3923962 |
T |
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| Q |
214 |
tgtattatcatgtaattggttt |
235 |
Q |
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| T |
3923963 |
tgtattatcatgtaattggttt |
3923984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 3907389 - 3907565
Alignment:
| Q |
59 |
atgttccatattcacacaattacacatagtcactgataagtactgaaccgatggatcaagagtagaaggcatatgttttgactttgtattatcattacag |
158 |
Q |
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||||||| ||||||||||||||| ||||||| || ||||||| |||| |||||||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
3907389 |
atgttccggattcacacaattacatatagtcattgttaagtaccgaactgatggatcaagattagaaggcatatgtttccactatgtattatcattacag |
3907488 |
T |
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| Q |
159 |
acttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtccatgtattatcatgtaattggttt |
235 |
Q |
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| T |
3907489 |
acttgatttaccaaagttggaacttgaatttatctaatcatgatttaacggtccatgtattatcatgtaattggttt |
3907565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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