View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_35 (Length: 208)
Name: NF5103_high_35
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_35 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 43240585 - 43240758
Alignment:
| Q |
22 |
gcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttc |
121 |
Q |
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| T |
43240585 |
gcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttc |
43240684 |
T |
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| Q |
122 |
tgagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctc |
195 |
Q |
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| T |
43240685 |
tgagtattattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctattcatctc |
43240758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 38927978 - 38927812
Alignment:
| Q |
22 |
gcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttc |
121 |
Q |
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| T |
38927978 |
gcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatacttc |
38927882 |
T |
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| Q |
122 |
t--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt |
189 |
Q |
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| T |
38927881 |
tatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt |
38927812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 21115258 - 21115189
Alignment:
| Q |
40 |
ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc |
109 |
Q |
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| T |
21115258 |
ttgataatcataaagaaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc |
21115189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 3571035 - 3570869
Alignment:
| Q |
22 |
gcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttc |
121 |
Q |
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||||||| ||| ||||||| ||||||||||||| ||||| | ||||| | ||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
3571035 |
gcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatacttc |
3570939 |
T |
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| Q |
122 |
t--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt |
189 |
Q |
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| T |
3570938 |
tatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt |
3570869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 46354391 - 46354238
Alignment:
| Q |
35 |
tttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttatt |
132 |
Q |
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| T |
46354391 |
tttaattgataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaattttatt |
46354295 |
T |
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| Q |
133 |
gccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt |
189 |
Q |
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| T |
46354294 |
gccactataaatttggtgtgtgcaatatctaattatacttgcagaatttcagctatt |
46354238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 80963 - 81059
Alignment:
| Q |
30 |
tgaagtttaattgataatcataaagtaaagttttactacgataatta----ttgggtaggaaaattgtaaaactaatagtactcaaaatatacttct |
122 |
Q |
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||||| || |||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
80963 |
tgaaggtttattgataatcataaagtaaagttttaatgtgataattaatgattgggtgagaaaattgtaaaactaatagtactccatatatacttct |
81059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 43652051 - 43651982
Alignment:
| Q |
40 |
ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc |
109 |
Q |
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| T |
43652051 |
ttgataatcataaaggaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc |
43651982 |
T |
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