View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_4 (Length: 443)
Name: NF5103_high_4
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 13944126 - 13944550
Alignment:
| Q |
1 |
aatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaattatagtgccttca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944126 |
aatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaattatagtgccttca |
13944225 |
T |
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| Q |
101 |
tctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagttgttggcattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944226 |
tctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagttgttggcattaa |
13944325 |
T |
|
| Q |
201 |
gctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaactcttgttattatgggtttcctgtcgaagatgattagaaccattatt |
300 |
Q |
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| T |
13944326 |
gctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaaatcttgttactatgggtttcctgtcgaagatgattagaaccattatt |
13944425 |
T |
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| Q |
301 |
ttatgtattagttctctgaacttctctattttaattaatggtcatccctctcaatacttcactcccaccaggggaataaggcagggggattctctcccta |
400 |
Q |
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| T |
13944426 |
ttatgtgttagttctctgaacttctctattttaattaatggtcatccctctcaatacttcactcccaccaggggaataaggcagggggattctctcccta |
13944525 |
T |
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| Q |
401 |
tctctttattatttgtgcagatgtt |
425 |
Q |
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| T |
13944526 |
tctctttattatttgtgcagatgtt |
13944550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 14085315 - 14085739
Alignment:
| Q |
1 |
aatttgaaaaaggaagacacacaatgcacacaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaattatagtgccttca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085315 |
aatttgaaaaaggaagacacacaatgcacaaaagaaaaagtgaataatgacaacgagcactgatatatctcataacactcccaaaattatagtgccttca |
14085414 |
T |
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| Q |
101 |
tctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagttgttggcattaa |
200 |
Q |
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| T |
14085415 |
tctctagcaggctgataacagataactccttacttgcttatgaagctttccattttcttaaaaataatactaataaaagaaaaggagttgttggcattaa |
14085514 |
T |
|
| Q |
201 |
gctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaactcttgttattatgggtttcctgtcgaagatgattagaaccattatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14085515 |
gctaaacatggaaaaggcttattataggatagaatggggttttcttgagcaaaatcttgttactatgggtttcctgtcgaagatgattagaaccattatt |
14085614 |
T |
|
| Q |
301 |
ttatgtattagttctctgaacttctctattttaattaatggtcatccctctcaatacttcactcccaccaggggaataaggcagggggattctctcccta |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085615 |
ttatgtgttagttctctgaacttctctattttaattaatggtcatccctctcaatacttcactcccaccaggggaataaggcagggggattctctcccta |
14085714 |
T |
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| Q |
401 |
tctctttattatttgtgcagatgtt |
425 |
Q |
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||||||||||||||||||||||||| |
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| T |
14085715 |
tctctttattatttgtgcagatgtt |
14085739 |
T |
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