View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_high_6 (Length: 438)
Name: NF5103_high_6
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 53597816 - 53597406
Alignment:
| Q |
18 |
acaatgagagcatatacaaggtatcaaagcagctttgttggaactgcatggcagagtcactagagtttttgttcagacacaacttggtaagagcatcaaa |
117 |
Q |
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| T |
53597816 |
acaatgagagcatatacaaggtatcaaagcagctttgttggaactgcatgcaagagtcactagaatttttgttcagacacaacttggtaagagcttcaaa |
53597717 |
T |
|
| Q |
118 |
atgggaacttccactgatgtgggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccagattgcaaagtggaacattcttttcct |
217 |
Q |
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| T |
53597716 |
atgggaacttccactgatgtgggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccagattgcaaagtggaacattcttttcct |
53597617 |
T |
|
| Q |
218 |
gaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597616 |
gaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagcttgggctgatgaagagaaatatt |
53597517 |
T |
|
| Q |
318 |
acacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597516 |
acacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgt |
53597417 |
T |
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| Q |
418 |
gtgtgatgatg |
428 |
Q |
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| T |
53597416 |
gtgtgatgatg |
53597406 |
T |
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