View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_11 (Length: 348)
Name: NF5103_low_11
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 338
Target Start/End: Original strand, 36704359 - 36704675
Alignment:
| Q |
21 |
atgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgat |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704359 |
atgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgat |
36704458 |
T |
|
| Q |
121 |
cactgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttg |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704459 |
cactgagatcattgagcaaaaccttcacatcttgtacatcagataaaaaa-tcattccctccatagccaagaaaaagtgggaattcacttgagatttttg |
36704557 |
T |
|
| Q |
221 |
tcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactac |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704558 |
tcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactac |
36704657 |
T |
|
| Q |
321 |
tcaaatttcatagtataa |
338 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
36704658 |
tcaaatttcatagtataa |
36704675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 36711505 - 36711819
Alignment:
| Q |
20 |
catgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||| || ||| ||||||| || |
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| T |
36711505 |
catgggatcataaacgacttgtttagcattatcacccaatataaaatcaagatgtgcataatcatccttaaacaataccacacggttgctagcatcatgg |
36711604 |
T |
|
| Q |
120 |
tcact---gagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatt |
216 |
Q |
| |
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||| | ||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| | |||| |
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| T |
36711605 |
tcattattgagttcattgaacaaaaccttcacatcttgtacatcagatagagta-tctttccctccatagctgagaaaaagggggaattcactagggatt |
36711703 |
T |
|
| Q |
217 |
tttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatca |
316 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||| |
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| T |
36711704 |
ttggtcacgtcataagttggaggaaccctttgtccatagtgttgtaaattttgtgcttcatcaacataatcatactttgatatttgtccttttctgatca |
36711803 |
T |
|
| Q |
317 |
ctactcaaatttcata |
332 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
36711804 |
ctactcaaatttcata |
36711819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 328
Target Start/End: Complemental strand, 36664928 - 36664625
Alignment:
| Q |
24 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcac |
123 |
Q |
| |
|
|||||||||| || ||||||||||||| | |||| || ||||| ||||||||||| ||| || ||| | ||||| ||||||||| ||| ||||| |
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| T |
36664928 |
ggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactagcttgttagaatcatgatcct |
36664829 |
T |
|
| Q |
124 |
tgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtca |
223 |
Q |
| |
|
|||| ||||| ||||||| |||||||| ||||| |||||| || | ||||||| || |||||||| ||||| || | | |||||| |||| |
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|
| T |
36664828 |
tgaggtcattaagcaaaagattcacatcctgtacgtcagataacata-tcttgccctccaacacctagaaaaagagggaactcggtagggattttggtca |
36664730 |
T |
|
| Q |
224 |
tgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactca |
323 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||| |
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|
| T |
36664729 |
agtcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgtgatttttcctgttctcgtcactattca |
36664630 |
T |
|
| Q |
324 |
aattt |
328 |
Q |
| |
|
||||| |
|
|
| T |
36664629 |
aattt |
36664625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 36677317 - 36677393
Alignment:
| Q |
24 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
36677317 |
ggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36677393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 36687399 - 36687475
Alignment:
| Q |
24 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
36687399 |
ggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36687475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 36677440 - 36677489
Alignment:
| Q |
247 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
296 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||||||||||||| |
|
|
| T |
36677440 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36677489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 36687522 - 36687571
Alignment:
| Q |
247 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
296 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||||||||||||| |
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|
| T |
36687522 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36687571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 30905807 - 30905505
Alignment:
| Q |
20 |
catgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttga |
119 |
Q |
| |
|
||||||||||||||| |||||||||||| || | || | ||||||||||||||||||||| | |||||| | ||||| ||||||||||||| ||| |
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|
| T |
30905807 |
catgggatcataaaccacttgtttagcactgacggccataacaaaatcagcatgtgcataatcttgattgaacgctgccacgagcttgttagcatcatga |
30905708 |
T |
|
| Q |
120 |
tcactgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagattttt |
219 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||| || | ||||||||| || |||||||||||||| ||| | | |||||| |
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|
| T |
30905707 |
tcttggaggtcattgagcaaaaccttcacatcttgtacatcagatagcata-tcttgccctccatatccgagaaaaagtgggaaatcattcgggattttg |
30905609 |
T |
|
| Q |
220 |
gtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcacta |
319 |
Q |
| |
|
|||| ||| || ||||||||||| | ||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30905608 |
gtcaggtcgtaagttggaggaactcgttgaccatagtgttgtacattttgtgcttgatcaacataatcatactttgctatttttcctgttctgatcacta |
30905509 |
T |
|
| Q |
320 |
ctca |
323 |
Q |
| |
|
|||| |
|
|
| T |
30905508 |
ctca |
30905505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 30912273 - 30912203
Alignment:
| Q |
20 |
catgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttga |
90 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
30912273 |
catgggatcataaacgtcttgtttagcggtgacactcataataaaatcagcatgtgcataattttccttga |
30912203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 11300745 - 11300706
Alignment:
| Q |
281 |
cataatcatactttgctatttttcctgttctgatcactac |
320 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11300745 |
cataatcatactttgctattgttccttttctgatcactac |
11300706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 11295048 - 11294987
Alignment:
| Q |
20 |
catgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataat |
81 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
11295048 |
catgggatcataaacgtcttgtttagctttgacacctaaaataaaatcagcatgagcataat |
11294987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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