View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5103_low_12 (Length: 317)
Name: NF5103_low_12
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 11850035 - 11849824
Alignment:
| Q |
9 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850035 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
11849936 |
T |
|
| Q |
109 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849935 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
11849836 |
T |
|
| Q |
209 |
ttgatatactct |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11849835 |
ttgatatactct |
11849824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 11851671 - 11851863
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || ||||||||||||||||||| || |||||||||||||| || | ||||| ||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
11851671 |
agtgccaatggaagaagtgtggtggccactgtggttgatgagtgtgactctacgatgggatgtgatgaagaacatgattaccaacctccttgtccaaaca |
11851770 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
213 |
Q |
| |
|
|||| |||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
11851771 |
acattgttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
11851863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 11854385 - 11854579
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||| || ||| ||||| ||| || |||||||||| |||||||||||| || | |
|
|
| T |
11854385 |
agtgcgaatggaaaaagtgtggtggccatggttgttgatgagtgtgactccagaaagggatgtgatgaacaacatgattaccaacctccttgtccaaata |
11854484 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
215 |
Q |
| |
|
|||| |||||||| || || |||||||||||||| || ||||||| | || ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
11854485 |
acattgttgatgcttccaaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgatat |
11854579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 29073133 - 29073344
Alignment:
| Q |
9 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29073133 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
29073232 |
T |
|
| Q |
109 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29073233 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtccgatgc |
29073332 |
T |
|
| Q |
209 |
ttgatatactct |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29073333 |
ttgatatactct |
29073344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 29102096 - 29102307
Alignment:
| Q |
9 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29102096 |
aaaattaagattagtgcgaacggaagaagcgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
29102195 |
T |
|
| Q |
109 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29102196 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
29102295 |
T |
|
| Q |
209 |
ttgatatactct |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29102296 |
ttgatatactct |
29102307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 29116241 - 29116447
Alignment:
| Q |
9 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29116241 |
aaaattaagattagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctc |
29116340 |
T |
|
| Q |
109 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29116341 |
cttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgc |
29116440 |
T |
|
| Q |
209 |
ttgatat |
215 |
Q |
| |
|
||||||| |
|
|
| T |
29116441 |
ttgatat |
29116447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 3619074 - 3619265
Alignment:
| Q |
24 |
gcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaacaaca |
123 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||| || || | ||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3619074 |
gcgaatggaagaagtgtggttgccacggttgttgatgagtgcgactctacgatgggatgtgataaagaacatgattaccaacctccttgtaacaacaaca |
3619173 |
T |
|
| Q |
124 |
tagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3619174 |
tagttgatgcctctaaagctgtgtggaaagccttggatgttcctcatgatcaatggggtggattggatattacatggtctgatgcttgatat |
3619265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 28956870 - 28957068
Alignment:
| Q |
18 |
attagtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaaca |
117 |
Q |
| |
|
||||||||||| || | |||||||||||||| ||||||||||||||||| || | | ||||| ||| ||||||||||||| |||||||||||| | |
|
|
| T |
28956870 |
attagtgcgaatgggaaaagtgtggtggccatggttgttgatgagtgtgactccacaaagggatgtgatgaagaacatgattaccaacctccttgtccaa |
28956969 |
T |
|
| Q |
118 |
acaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatata |
216 |
Q |
| |
|
||||||| |||||||| || || ||||||||| |||| || ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
28956970 |
acaacattgttgatgcttccaaggctgtgtgggaagctttaggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgatata |
28957068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 3617580 - 3617388
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || |||| |||||| ||||||| || |||||||||||||| || | | ||||| ||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
3617580 |
agtgccaatggaaaaagtgtagtggccacggtggttgatgagtgtgactctacaatgggatgtgatgaagaacatgattaccaacctccttgtccaaaca |
3617481 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
213 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||| |||||||||| |
|
|
| T |
3617480 |
acattgttgatgcttctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagatattacatggtcagatgcttgat |
3617388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 29058273 - 29058081
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || |||| |||||| ||||||| || |||||||||||||| || | | ||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
29058273 |
agtgccaatggaaaaagtgtagtggccacggtggttgatgagtgtgactcaacaatgggatgtgatgaagaacatgattatcaacctccttgcccaaaca |
29058174 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
213 |
Q |
| |
|
|||| |||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
29058173 |
acattgttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
29058081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 29071501 - 29071309
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || ||||||||||| ||||||| || |||||||||||||| || | ||||| ||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
29071501 |
agtgccaatggaagaagtgtagtggccactgtggttgatgagtgtgactctacgatgggatgtgatgaagaacatgattaccaacctccttgtccaaaca |
29071402 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
213 |
Q |
| |
|
|||| |||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
29071401 |
acattgttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
29071309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29069039 - 29068845
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||| || ||| ||||| ||| || |||||||||| |||||||||||| || | |
|
|
| T |
29069039 |
agtgcgaatggaaaaagtgtggtggccatggttgttgatgagtgtgactccagaaagggatgtgatgaacaacatgattaccaacctccttgtccaaata |
29068940 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
215 |
Q |
| |
|
|||| |||||||| || || |||||||||||||| || ||||||| | || ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
29068939 |
acattgttgatgcttccaaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgatat |
29068845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 29078234 - 29078043
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || ||||||| ||| ||||||| ||||| || ||||| ||||| ||| ||||| ||| || | ||||| || ||||| ||||||| |||| |
|
|
| T |
29078234 |
agtgctaatggaagaaatgtcgtggccatggttgtcgacgagtgcgattctagaaagggatgtgatgaacagcatgactaccaaccaccttgtacaaaca |
29078135 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttga |
212 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
29078134 |
acattgttgatgcttccaaagctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggccttgacattacatggtcagatgcttga |
29078043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29110985 - 29110791
Alignment:
| Q |
21 |
agtgcgaacggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaaca |
120 |
Q |
| |
|
||||| || ||||||| ||| ||||||| |||||||| ||||| ||||| ||| ||||| ||| || | ||||| || ||||| || ||| |||| |
|
|
| T |
29110985 |
agtgctaatggaagaaatgtcgtggccatggttgttgacgagtgcgattctagaaagggatgtgatgaacagcatgactaccaaccaccgtgtccaaaca |
29110886 |
T |
|
| Q |
121 |
acatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
215 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||| | || ||||||||||| |||||||||||| |
|
|
| T |
29110885 |
acattgttgatgcttccaaagctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggtcttgatattacatggtcagatgcttgatat |
29110791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 29066885 - 29067009
Alignment:
| Q |
89 |
agaacatgattatcaacctccttgtaacaacaacatagttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattg |
188 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||||| |||||||| || | ||||||||||||||||| ||||| || ||||||||||||| ||| |
|
|
| T |
29066885 |
agaacatgagtatcaacctccatgtgccaataacattgttgatgcttcaatggctgtgtggaaagccttaggtgtcccaaggaatcaatggggtgggttg |
29066984 |
T |
|
| Q |
189 |
gacattacatggtctgatgcttgat |
213 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
29066985 |
gatattacatggtctgatgcttgat |
29067009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 29098393 - 29098499
Alignment:
| Q |
30 |
ggaagaagtgtggtggccaaagttgttgatgagtgtgattcgagagcaggatgcgataaagaacatgattatcaacctccttgtaacaacaacatagttg |
129 |
Q |
| |
|
||||||||||||||||||| || || |||||| |||| || | | |||| |||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
29098393 |
ggaagaagtgtggtggccatggtagtcgatgagcgtgactctacaatgagatgtgataaagatcatgattaccaacctccttgtcgcaacaacatagttg |
29098492 |
T |
|
| Q |
130 |
atgcctc |
136 |
Q |
| |
|
||||||| |
|
|
| T |
29098493 |
atgcctc |
29098499 |
T |
|
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