View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_17 (Length: 281)
Name: NF5103_low_17
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 41750024 - 41750289
Alignment:
| Q |
4 |
gaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtattg |
103 |
Q |
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| T |
41750024 |
gaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtattg |
41750123 |
T |
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| Q |
104 |
ggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgatagcgtatacgttacacttaa |
203 |
Q |
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| T |
41750124 |
ggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgataacgtatacgttaaacttaa |
41750223 |
T |
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| Q |
204 |
ttaagagtgtaggaaatatgcatcataagcgttgac---atgataatgcactaaaattgcactttt |
266 |
Q |
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| T |
41750224 |
ttaagagtgtaggaaatatgcatcataagcgttgacatgatgataatgcactaaaattgcactttt |
41750289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 41756775 - 41756936
Alignment:
| Q |
82 |
tatagtattagtgcatgtattgggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatg |
181 |
Q |
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| T |
41756775 |
tatagtattagtgcatgtattgggtgatt-cacacgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatatcgttaatg |
41756873 |
T |
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| Q |
182 |
atagcgtatacgttacacttaattaagagtgtaggaaatatgcatcataagcgttgacatgat |
244 |
Q |
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| T |
41756874 |
ataacgtatacgttacagttaattaagtgtgtaggaaatatgcatcataagcgctgacatgat |
41756936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 41740141 - 41740198
Alignment:
| Q |
4 |
gaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatg |
61 |
Q |
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||||||||||||||| || | |||||||| | |||||||| |||| |||||||||||| |
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| T |
41740141 |
gaagaagcaaagagacaaacttggtgattcgtggagtttgcttcgccattgatgaatg |
41740198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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