View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5103_low_24 (Length: 250)

Name: NF5103_low_24
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5103_low_24
NF5103_low_24
[»] chr1 (10 HSPs)
chr1 (1-239)||(15036308-15036546)
chr1 (1-239)||(15010288-15010526)
chr1 (1-233)||(15016409-15016641)
chr1 (1-239)||(15001395-15001633)
chr1 (3-239)||(15024405-15024641)
chr1 (3-239)||(15031746-15031982)
chr1 (3-122)||(15040161-15040280)
chr1 (9-208)||(14503301-14503500)
chr1 (1-106)||(14523210-14523315)
chr1 (31-126)||(14467204-14467299)
[»] scaffold0400 (2 HSPs)
scaffold0400 (1-126)||(5892-6017)
scaffold0400 (9-119)||(12187-12297)
[»] scaffold0365 (2 HSPs)
scaffold0365 (1-126)||(6536-6661)
scaffold0365 (9-119)||(12830-12940)
[»] chr7 (5 HSPs)
chr7 (26-126)||(14605299-14605399)
chr7 (30-126)||(16102283-16102379)
chr7 (30-126)||(16171961-16172057)
chr7 (31-126)||(16024482-16024577)
chr7 (1-99)||(17847959-17848057)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15036546 - 15036308
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||| |||| |||||||||||||||||||||    
T  15036546 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggcttgagcaattcttcaaactct 15036447  T
Q  101 ctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatc 200  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15036446 ctggaactaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatc 15036347  T
Q  201 agataattcgagtacttccaaatccgtaagcctgttcat 239  Q
    | ||||||||||||||||||||||||||||||| |||||    
T  15036346 atataattcgagtacttccaaatccgtaagcctattcat 15036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15010526 - 15010288
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  15010526 tccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaattcttcaaactct 15010427  T
Q  101 ctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| |||  |||||||    
T  15010426 ctggaactaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcccaccaacacaaatattgtgaggtaaatgaccaacaaaaatattatc 15010327  T
Q  201 agataattcgagtacttccaaatccgtaagcctgttcat 239  Q
    |||||| | |||||||||||||||  ||||||| |||||    
T  15010326 agataaatggagtacttccaaatcgataagcctattcat 15010288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15016641 - 15016409
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  15016641 tccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaattcttcaaactct 15016542  T
Q  101 ctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatc 200  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||  ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  15016541 ctggaactaggcctgtgaactggttaagagcagcagagaatttttccaacttcccaccgacacaaatattatgaggtaaatgaccaacaaaattattatc 15016442  T
Q  201 agataattcgagtacttccaaatccgtaagcct 233  Q
    | | || |||||| ||| |||||| ||||||||    
T  15016441 atacaaatcgagtgctttcaaatcggtaagcct 15016409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15001633 - 15001395
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| || | |||| ||||| |||||||||||||||||||||    
T  15001633 tccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaattcttcaaactct 15001534  T
Q  101 ctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatc 200  Q
    |||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||||    
T  15001533 ctggaactaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaaatgaccaacaaaattattatc 15001434  T
Q  201 agataattcgagtacttccaaatccgtaagcctgttcat 239  Q
    |||||| | ||||||||||||||| |||||||| |||||    
T  15001433 agataaatggagtacttccaaatctgtaagcctattcat 15001395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 15024641 - 15024405
Alignment:
Q  3 caagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctct 102  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| |||||| || ||||||||||||||||||||    
T  15024641 caagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctct 15024542  T
Q  103 ggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatcag 202  Q
    ||||||| ||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||     
T  15024541 ggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaattattaacat 15024442  T
Q  203 ataattcgagtacttccaaatccgtaagcctgttcat 239  Q
     ||| | |||| |||||||||| |||||||| |||||    
T  15024441 ctaaatggagtgcttccaaatcggtaagcctattcat 15024405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 15031982 - 15031746
Alignment:
Q  3 caagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctct 102  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| |||||| || ||||||||||||||||||||    
T  15031982 caagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctct 15031883  T
Q  103 ggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatcag 202  Q
    ||||||| ||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||     
T  15031882 ggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaattattaacat 15031783  T
Q  203 ataattcgagtacttccaaatccgtaagcctgttcat 239  Q
     ||| | |||| |||||||||| |||||||| |||||    
T  15031782 ctaaatggagtgcttccaaatcggtaagcctattcat 15031746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 15040280 - 15040161
Alignment:
Q  3 caagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctct 102  Q
    |||||||||| |||||||||| || ||||||||||||||||  ||||||||||| ||||| || | |||||| ||  |||| |||||||||||||||| |    
T  15040280 caagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagacttgaacaattcttcaaactcttt 15040181  T
Q  103 ggaactaggcctgtgaactg 122  Q
    |||| | | |||||||||||    
T  15040180 ggaattggacctgtgaactg 15040161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 14503500 - 14503301
Alignment:
Q  9 tggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaact 108  Q
    |||||| ||||||||||  ||||||||||||||||| | ||| ||||  | |||||| | |||  ||||| | ||||||||||| ||||||| ||||| |    
T  14503500 tggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattctttaaactctttggaatt 14503401  T
Q  109 aggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaatttattatcagataatt 208  Q
     | |||||||| ||||||     ||||||||| | | | ||| | ||||| |||||||| |||||||||||||| || || || ||||||||||||||||    
T  14503400 ggccctgtgaattggttattactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgaggtaaatggcctatgaaattattatcagataatt 14503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14523210 - 14523315
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    ||||| |||||||||||||||||||| |||||||||||||| |||| || |||||| | ||| || | |||  ||||| | || || |||||||||||||    
T  14523210 tccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgttttggttaagtctcaatcttataaggctagaacagttcttcaaactct 14523309  T
Q  101 ctggaa 106  Q
    ||||||    
T  14523310 ctggaa 14523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 14467299 - 14467204
Alignment:
Q  31 gttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 126  Q
    ||||||||  |||| ||||| ||||| | |||||||| ||| | |||| | ||||| ||||||||||||| ||||| | |||||||||| ||||||    
T  14467299 gttatattgtcagttagttgattttgttgaagccttactctataaaggctagagcagttcttcaaactctttggaattgggcctgtgaattggtta 14467204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 6017 - 5892
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    ||||| || |||||||||||||| || |||||||||||| |||||||||||||||| | ||| || | |||||||||| |||||||||| || |||||||    
T  6017 tccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactct 5918  T
Q  101 ctggaactaggcctgtgaactggtta 126  Q
     ||||||||| ||  |||||||||||    
T  5917 ttggaactagaccaatgaactggtta 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 12297 - 12187
Alignment:
Q  9 tggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaact 108  Q
    |||||| ||||||||||  ||||||||||||||||| | ||| ||||  | |||||| | |||  ||||| | ||||||||||||||||||  |||||||    
T  12297 tggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaact 12198  T
Q  109 aggcctgtgaa 119  Q
    |  ||||||||    
T  12197 aatcctgtgaa 12187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 6661 - 6536
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactct 100  Q
    ||||| || |||||||||||||| || |||||||||||| |||||||||||||||| | ||| || | |||||||||| |||||||||| || |||||||    
T  6661 tccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactct 6562  T
Q  101 ctggaactaggcctgtgaactggtta 126  Q
     ||||||||| ||  |||||||||||    
T  6561 ttggaactagaccaatgaactggtta 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 12940 - 12830
Alignment:
Q  9 tggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaact 108  Q
    |||||| ||||||||||  ||||||||||||||||| | ||| ||||  | |||||| | |||  ||||| | ||||||||||||||||||  |||||||    
T  12940 tggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaact 12841  T
Q  109 aggcctgtgaa 119  Q
    |  ||||||||    
T  12840 aatcctgtgaa 12830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 14605399 - 14605299
Alignment:
Q  26 tctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtt 125  Q
    ||||||||||||||||||| ||||||||||| ||||| || |  ||  ||| | | ||||||||||||||||||| |||||||  ||||||||| |||||    
T  14605399 tctctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggtt 14605300  T
Q  126 a 126  Q
    |    
T  14605299 a 14605299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 16102379 - 16102283
Alignment:
Q  30 tgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 126  Q
    ||||||||||||||| ||||||||||| ||||| || |||||  ||| | | |||||||||||||||||||  |||||| |||| ||||| ||||||    
T  16102379 tgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta 16102283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 16172057 - 16171961
Alignment:
Q  30 tgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 126  Q
    ||||||||||||||| ||||||||||| ||||| || |||||  ||| | | |||||||||||||||||||  |||||| |||| ||||| ||||||    
T  16172057 tgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta 16171961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 16024577 - 16024482
Alignment:
Q  31 gttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 126  Q
    |||||||||||||| ||||||||||| ||||| |  |||||  ||| | | ||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  16024577 gttatatttccagtaagttggttttgttcaagtcgaagtcttataatgctagagcaattcttcaaactctttggaacgcggccagtgaagtggtta 16024482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17848057 - 17847959
Alignment:
Q  1 tccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactc 99  Q
    ||||| || ||||||||||||||    ||||||||||||||||  ||||||||||| |||||||| | |||   || | ||||||||||||||||||||    
T  17848057 tccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaattcttacaatgcttgagcaattcttcaaactc 17847959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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