View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_27 (Length: 245)
Name: NF5103_low_27
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11849577 - 11849350
Alignment:
| Q |
1 |
ttccaagttttaaccatcctcatgttctatttgtatttgtttctgtcctgagcttgtcttagnnnnnnnnnccctttgttatactttgtattttaccttc |
100 |
Q |
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| T |
11849577 |
ttccaagttttaaccatcctcaagttctatttgtttttgtttctgtcctgagcatgtcttagtttttttc-ccctttgttatacttcatattttaccttc |
11849479 |
T |
|
| Q |
101 |
ataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaacatagtaactcgtattacctcaaaacaaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11849478 |
ataactttatcctaaatgtatctcatatagtttatcttgtgtcaaatgtgaacatccatttagtcatagaacatagtaactcgtattacctcaaaacaaa |
11849379 |
T |
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| Q |
201 |
aacaaaagacagtaacttacgttaatttt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11849378 |
aacaaaagacagtaacttacgttaatttt |
11849350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29073593 - 29073820
Alignment:
| Q |
1 |
ttccaagttttaaccatcctcatgttctatttgtatttgtttctgtcctgagcttgtcttagnnnnnnnnnccctttgttatactttgtattttaccttc |
100 |
Q |
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||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
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| T |
29073593 |
ttccaagttttaaccattcttaagttctatttgtatttgtttctgtcctgagcttgtcttagtttttttt-ccctttgctatactttatattttaccttc |
29073691 |
T |
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| Q |
101 |
ataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaacatagtaactcgtattacctcaaaacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
29073692 |
ataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaacatattaactcatattacctcaaaacaaa |
29073791 |
T |
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| Q |
201 |
aacaaaagacagtaacttacgttaatttt |
229 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
29073792 |
aacaaaagatagtaacttacgttaatttt |
29073820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 29067097 - 29067161
Alignment:
| Q |
89 |
tattttaccttcataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaac |
153 |
Q |
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||||||||||||| || |||||||||||||| | ||||||| ||| ||| ||||||||| ||||| |
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| T |
29067097 |
tattttaccttcacaaatttatcctaaatgtatttcatataatttctctcgtgtcaaatatgaac |
29067161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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