View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_29 (Length: 240)
Name: NF5103_low_29
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 258857 - 259086
Alignment:
| Q |
1 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
100 |
Q |
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| T |
258857 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
258956 |
T |
|
| Q |
101 |
atgaactaactgtaagtagtgaagggatacataca------tgttattgctattatcattgtta---ttgttgttgttgttatgtaaccagacatggttt |
191 |
Q |
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| T |
258957 |
atgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatcattgttattgttgttgttgttgttatgtaaccagacgtggttt |
259056 |
T |
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| Q |
192 |
tgtatattgcaggatttcagcacatcctgg |
221 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
259057 |
tgtatattgcaggatttcagcacatcctgg |
259086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 657064 - 656835
Alignment:
| Q |
1 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657064 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
656965 |
T |
|
| Q |
101 |
atgaactaactgtaagtagtgaagggatacatacatgtt------attgctattatcattgtta---ttgttgttgttgttatgtaaccagacatggttt |
191 |
Q |
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| T |
656964 |
atgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatcattgttattgttgttgttgttgttatgtaaccagacgtggttt |
656865 |
T |
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| Q |
192 |
tgtatattgcaggatttcagcacatcctgg |
221 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
656864 |
tgtatattgcaggatttcagcacatcctgg |
656835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 842799 - 842570
Alignment:
| Q |
1 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
842799 |
ttcagcgcaaggtggtgtagtccttgtaagataattgcaccgtattattgcgagttatcagagaaatacccatcaattatgttcttggtaattgatgtgg |
842700 |
T |
|
| Q |
101 |
atgaactaactgtaagtagtgaagggatacatacatgtt------attgctattatcattgtta---ttgttgttgttgttatgtaaccagacatggttt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
842699 |
atgaactaactgtaagtagtgaagggatacatacatgttattgttattgttattatcattgttattgttgttgttgttgttatgtaaccagacgtggttt |
842600 |
T |
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| Q |
192 |
tgtatattgcaggatttcagcacatcctgg |
221 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
842599 |
tgtatattgcaggatttcagcacatcctgg |
842570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 27547816 - 27547784
Alignment:
| Q |
92 |
ttgatgtggatgaactaactgtaagtagtgaag |
124 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27547816 |
ttgatgtggatgaactaactgtaagtagtgaag |
27547784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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