View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_3 (Length: 479)
Name: NF5103_low_3
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 188 - 461
Target Start/End: Original strand, 8847968 - 8848241
Alignment:
| Q |
188 |
tttatagaatataaatcaactttttatgtctgaatgacatgtatggtgtataatcacctcattatgcagctttatggtactgttcaccaatcacatcgtt |
287 |
Q |
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| T |
8847968 |
tttatagaatataaatcaactttttatgtctgaatgacatgtatggtgtataatcacctcattatgcagctttatggtactgttcaccaatcacatcgtt |
8848067 |
T |
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| Q |
288 |
aaaaacaaaagataatggtggatatgtgtggggtgcacatgctagtaggagagtttcatctgcttattatgaattaattaagattaggtactgtactaca |
387 |
Q |
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| T |
8848068 |
aaaaacaaaagttaatggtggatatgtgtggggtgcacatgctagtaggagagtttcatctgcttattatgaattaattaagattaggtactgtactaca |
8848167 |
T |
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| Q |
388 |
gatttaaaagctactttacttgtacgtgcaatacaatattcagaaaagctctgatcaagaattggagtggcatc |
461 |
Q |
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| T |
8848168 |
gatttaaaagctactttacttgtacgtgcaatacaatattcagaaaagctctgatcaagaattggagtggcatc |
8848241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 8847685 - 8847767
Alignment:
| Q |
114 |
atctattgaaatataatatggataagtttcataacacctcctccaattaaattcattcaaatcaaattcacatttttatagaa |
196 |
Q |
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| T |
8847685 |
atctattgaaatataatatggataagtttcataacacttcctccaattaaattcattcaaatcaaattcacatttttatagaa |
8847767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 8847389 - 8847443
Alignment:
| Q |
10 |
tagataatactaacataaaatgaaccaacaagatgaaaagtgttacaacttacaa |
64 |
Q |
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| T |
8847389 |
tagataacactaacataaaatgaaccaacaagatgaaaagtgttacaacttacaa |
8847443 |
T |
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