View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_33 (Length: 217)
Name: NF5103_low_33
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_33 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 43240942 - 43240737
Alignment:
| Q |
12 |
gaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttattatttttgcagccaattcaacaatcatagaa |
111 |
Q |
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| T |
43240942 |
gaatataatacgggagacatttatttaagatcatcgaaaaagccaatgtagatatgataaggcatttataatttttgcagccaattcaacaatcatggaa |
43240843 |
T |
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| Q |
112 |
tttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240842 |
tttcctaatgaagtgtagtaatgttgtctagtttacaatcataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaa |
43240743 |
T |
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| Q |
212 |
attccg |
217 |
Q |
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|||||| |
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| T |
43240742 |
attccg |
43240737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 38927688 - 38927825
Alignment:
| Q |
75 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
174 |
Q |
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| T |
38927688 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
38927785 |
T |
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| Q |
175 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
215 |
Q |
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| T |
38927786 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattc |
38927825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 43230222 - 43230152
Alignment:
| Q |
12 |
gaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttatta |
82 |
Q |
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||||||||| ||||| ||||||| | ||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
43230222 |
gaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttatta |
43230152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 43246929 - 43246892
Alignment:
| Q |
45 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
82 |
Q |
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| T |
43246929 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43246892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 43253394 - 43253357
Alignment:
| Q |
45 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
82 |
Q |
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| T |
43253394 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43253357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 3570745 - 3570882
Alignment:
| Q |
75 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
174 |
Q |
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|||||||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
3570745 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
3570842 |
T |
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| Q |
175 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
215 |
Q |
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| T |
3570843 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattc |
3570882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 46354114 - 46354251
Alignment:
| Q |
75 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
174 |
Q |
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|||||||||| ||||| |||||||||| |||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||| |
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| T |
46354114 |
atttattattgttgcatccaattcaacgatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgattta |
46354211 |
T |
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| Q |
175 |
ataattaatgatggtacaatagagatgaatagccgaaattc |
215 |
Q |
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| |||||||||| |||||||||||| |||||| ||||||| |
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| T |
46354212 |
aaaattaatgat-gtacaatagagaaaaatagctgaaattc |
46354251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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