View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5103_low_5 (Length: 443)

Name: NF5103_low_5
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5103_low_5
NF5103_low_5
[»] chr4 (3 HSPs)
chr4 (293-404)||(37758456-37758567)
chr4 (11-88)||(37758182-37758259)
chr4 (146-206)||(37758317-37758377)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 37758456 - 37758567
Alignment:
Q  293 ttggagatcttagggataaatcatgaatgtgtgattggtctgtttatttatacaaataatgcatttggtaaaaatgaaaatatatggtttggatatttcg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37758456 ttggagatcttagggataaatcatgaatgtgtgattggtctgtttatttatacaaataatgcatttggtaaaaatgaaaatatatggtttggatatttcg 37758555  T
Q  393 aaggggcaaagg 404  Q
    ||||||||||||    
T  37758556 aaggggcaaagg 37758567  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 37758182 - 37758259
Alignment:
Q  11 cagagactaatccatcattagctcctaatacggctgcgcgaagccattgagccctttgccaataatcaatatctgaag 88  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37758182 cagaaactaatccatcattagctcctaatacggctgcgcgaagccattgagccctttgccaataatcaatatctgaag 37758259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 37758317 - 37758377
Alignment:
Q  146 gaattgtgattactttgtttagtgactcagaatcacatattgtaccaacggccattggtac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37758317 gaattgtgattactttgtttagtgactcagaatcacatattgtaccaacggccattggtac 37758377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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