View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5103_low_7 (Length: 437)
Name: NF5103_low_7
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 26032931 - 26032706
Alignment:
| Q |
12 |
atcatcagtattaaacgtcactggtgacacaaaagtatgaagnnnnnnncgaaggcttatttgactaaataattaatttttccaagtcatacaaaaataa |
111 |
Q |
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| T |
26032931 |
atcatcagtattaaacgtcactggtgacacaaaggtatgaagaaaaaaacgaaggcttatttgactaaataattaatttttccaagtcatacaaaaataa |
26032832 |
T |
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| Q |
112 |
taatcaaatttgttagaaggttgttca-ttatttttgttctaggaacca----------tatgagaccggatggagtagttaggtgtaacttaccaataa |
200 |
Q |
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| T |
26032831 |
taatcaaatttgttagaaggttgttcatttgtttttgttctaggaatcattcccaccactatgagaccggatggagtagttaggtgtaacttaccaataa |
26032732 |
T |
|
| Q |
201 |
ttgcaaaataacatcgacgtccaacc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26032731 |
ttgcaaaataacatcgacgtccaacc |
26032706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 26032621 - 26032512
Alignment:
| Q |
313 |
aagcttagtctaatgtgtatatgtaaattagttttacatcatacacaaatgtgtttctacccttagatcaataaatcacatcttatcacttttgatccaa |
412 |
Q |
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| T |
26032621 |
aagcttagactaatgtgtatatgtaaattagttttacatcatacacaaatgtgtttctacccttagatcaataaatcacatcttatcacttttgatccaa |
26032522 |
T |
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| Q |
413 |
taataaaact |
422 |
Q |
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|||||||||| |
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| T |
26032521 |
taataaaact |
26032512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 6126133 - 6126180
Alignment:
| Q |
366 |
tttctacccttagatcaataaatcacatcttatcacttttgatccaat |
413 |
Q |
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| T |
6126133 |
tttctaccattcgatcaataaatcacatcatatcacatttgatccaat |
6126180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 30918106 - 30918158
Alignment:
| Q |
366 |
tttctacccttagatcaataaatcacatcttatcacttttgatccaataataa |
418 |
Q |
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|||||||| |||||||||||| |||||| |||| | |||||||||||||||| |
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| T |
30918106 |
tttctaccattagatcaataactcacataatatctcatttgatccaataataa |
30918158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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