View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5103_low_9 (Length: 381)
Name: NF5103_low_9
Description: NF5103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5103_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 158 - 368
Target Start/End: Complemental strand, 14097803 - 14097593
Alignment:
| Q |
158 |
taaaaatttactaacttagtttcaaattttgcctactcctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctacccggtca |
257 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14097803 |
taaaaatttaccaacttagtttcaaattttgcctacccctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctatccggtca |
14097704 |
T |
|
| Q |
258 |
ttttgttttcaaaatagaacctttaaattagtaaataaatataagcatctggtataagtataattactacattataaacgaatgtaggaattaaatttta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14097703 |
ttttgttttcaaaatagaacctttaaattagtaaataaatataagcacctggtataagtataattactacattataaacgaatgtaggaattaaatttta |
14097604 |
T |
|
| Q |
358 |
gaatcaaagtg |
368 |
Q |
| |
|
||||||||||| |
|
|
| T |
14097603 |
gaatcaaagtg |
14097593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 14099976 - 14099921
Alignment:
| Q |
13 |
aatatagatcatatattataagcaaagttttaagaaacatagcaccaagacatgtc |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14099976 |
aatatagatcatatattataagcaaagttttaagaaacatagcatcaagacatgtc |
14099921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 11992312 - 11992406
Alignment:
| Q |
268 |
aaaatagaacctttaaattagtaaataaatataagcatctggtataagtataattactacattataaacgaat-gtaggaattaaattttagaat |
361 |
Q |
| |
|
||||||||||||||| |||||| || || |||||||| || || ||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
11992312 |
aaaatagaacctttagattagtcaacaattataagcacatgttacaagtatagttactacattataaacgaatggtaggaattaaattctagaat |
11992406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 2187683 - 2187611
Alignment:
| Q |
294 |
aaatataagcatctggtataagtataattactacat--tataaacgaatg-taggaattaaattttagaatca |
363 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2187683 |
aaatataagcacctggtacaagtatagttactacattatataaacgaatgctaggaattaaattctagaatca |
2187611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University