View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104-Insertion-1 (Length: 1220)

Name: NF5104-Insertion-1
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104-Insertion-1
NF5104-Insertion-1
[»] chr6 (11 HSPs)
chr6 (8-838)||(31967208-31968040)
chr6 (337-732)||(31963192-31963595)
chr6 (392-639)||(31960275-31960526)
chr6 (9-176)||(31964451-31964618)
chr6 (888-1072)||(31966961-31967157)
chr6 (733-838)||(31960154-31960263)
chr6 (9-76)||(31958503-31958570)
chr6 (889-929)||(31960084-31960124)
chr6 (690-747)||(32597867-32597924)
chr6 (495-546)||(20998334-20998385)
chr6 (971-1020)||(31963114-31963166)
[»] scaffold0848 (1 HSPs)
scaffold0848 (477-537)||(3260-3320)
[»] chr4 (2 HSPs)
chr4 (477-537)||(47392563-47392623)
chr4 (485-533)||(35587955-35588003)
[»] chr8 (1 HSPs)
chr8 (481-546)||(30935632-30935698)
[»] chr7 (1 HSPs)
chr7 (496-536)||(7380102-7380142)
[»] scaffold0014 (1 HSPs)
scaffold0014 (493-543)||(11689-11739)
[»] chr1 (1 HSPs)
chr1 (9-74)||(4549462-4549527)


Alignment Details
Target: chr6 (Bit Score: 706; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 838
Target Start/End: Complemental strand, 31968040 - 31967208
Alignment:
Q  8 ttaagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcaggtatttcaaattctaacaa 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31968040 ttaagctctcccaagctgtctcagaaatacttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcaggtatttcaaattctaacaa 31967941  T
Q  108 tttcgtatctgcgcgaaaacaaagtaaccctcaataatgatgtttgagaggcaaggaattcaacctcatgatccaatggaggcacaatttaaaaatttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31967940 tttcgtatctgcgcgaaaacaaagtaaccctcaataatgatgtttgagaggcaaggaattcaacctcatgacccaatggaggcacaatttaaaaatttat 31967841  T
Q  208 agtctaacatataaaaagtaagcttgttnnnnnnnnntataacaagagaaatatttcttaaactgtacgcacatttcaattttnnnnnnnnctggaaaat 307  Q
     |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||         || ||||||    
T  31967840 cgtctaacatataaaaagtaagcttgttaaaaaaaa-tataacaagagaaatatttcttaaactgtacgcacatttcaattt-aaaaaaagctagaaaat 31967743  T
Q  308 agataactatgaataatatctcactaaaataatcaattcatagaactctataatcaagcctattcaattaaggtctcctgatcattataaacactatcat 407  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31967742 agataactataaataatatctcactaaaataatcagttcatagaactctataatcaagcctattcaattaaggtctcctgatcactataaacactatcat 31967643  T
Q  408 agtgtttgtttctgtcgatatgggcttttttagtgtcccctttctttcttctttaagctttagaagaagaaaagaataattcagcagctcataatcatat 507  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967642 agtgtttgtttctgtcgatatgggcttttttactgtcccttttctttcttctttaagctttagaagaagaaaagaataattcagcagctcataatcatat 31967543  T
Q  508 tgtaagcaagcatatatccaatgcctcttagaagttgaattcatagtttttgtcaattgcagaattcaattgtaaggtaatcttaacttctcatgttagt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967542 tgtaagcaagcatatatccaatgcctcttagaagttgaattcatagtttttgtcaattgcagaattcaattgtaaggtaatcttaacttctcatgttagt 31967443  T
Q  608 tatttttaatattttaaaatagaatgatctatgtctataagggcatttccattttcaacagaagt----tagcattctttatatccattattatcatttc 703  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  31967442 tatttttaatatttttaaatagaatgatctatgtctataagggcatttccattttcaacagaagtttaatagcattctttatatccattattatcatttc 31967343  T
Q  704 aaaaatgatgataaatcagtttaatcaaacaacaccaaattcaaatccaatttgaaatgaaagaatttttattttaaatggatgatttgtagtcactttt 803  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967342 aaaaatgatgataaaccagtttaatcaaacaacaccaaattcaaatccaatttgaaatgaaagaatttttattttaaatggatgatttgtagtcactttt 31967243  T
Q  804 atatatcaaggtttattcttttgaaatagtacaca 838  Q
    |||||||||||||||||||||| ||||||||||||    
T  31967242 atatatcaaggtttattctttttaaatagtacaca 31967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 337 - 732
Target Start/End: Complemental strand, 31963595 - 31963192
Alignment:
Q  337 taatcaattcatagaactctataatcaagcctattcaattaaggtctcctgatcattataaacactatcatagtgtttgtttctgtcgatatg-ggcttt 435  Q
    |||||||||||||||| ||||||||||| | ||| |||||| |||| | ||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  31963595 taatcaattcatagaattctataatcaaacttatccaattacggtcccttgatcattataaacactatcatagtatttgtttctgtcgatgtgtggcttt 31963496  T
Q  436 tttagtgtcccctttctttcttctttaagctttagaagaagaaaagaataattcagcag---ctcataa-tcatattgtaagcaagcatatatccaatgc 531  Q
    ||||||| ||| ||||||||||||||||||||| ||||  |   |||||||||||||||   | ||||| |||||| |||||||||||||||||||||||    
T  31963495 tttagtgccccttttctttcttctttaagctttcgaagttg---agaataattcagcagcaacgcataattcatatcgtaagcaagcatatatccaatgc 31963399  T
Q  532 ctcttagaagttgaattcatagtttttgtcaattgcagaattcaattgtaaggtaatcttaacttctcatgttagttat---ttttaatattttaaaata 628  Q
    ||||||||||||||||||||||||| |  |||||| ||||||||||||  ||||||||||||||||||||||||||| |   |||| | |||||||||||    
T  31963398 ctcttagaagttgaattcatagtttattccaattgtagaattcaattgctaggtaatcttaacttctcatgttagtttttgattttcaaattttaaaata 31963299  T
Q  629 gaatgatctatgtctataagggcatttccattttcaacagaag----ttagcattctttatatccattattatcatttcaaaaatgatgataaatcagtt 724  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||    |||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  31963298 gaatgatctatgtctatatgggcatttctattctcaacagaagtttattagcattctttatatccattaatatcatttc-aaaatgatgataaaccagtt 31963200  T
Q  725 taatcaaa 732  Q
    ||| ||||    
T  31963199 taaacaaa 31963192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 392 - 639
Target Start/End: Complemental strand, 31960526 - 31960275
Alignment:
Q  392 ttataaacactatcatagtgtttgtttctgtcgatatgggc-ttttttagtgtcccctttctttcttctttaagctttagaagaagaaaagaataattca 490  Q
    ||||||||| |||||||||||||||||||| |||| ||||  ||||||||||  || ||||| |||| ||||||||||||||||||||||||||||||||    
T  31960526 ttataaacattatcatagtgtttgtttctgacgatgtggggattttttagtgctccttttctctctt-tttaagctttagaagaagaaaagaataattca 31960428  T
Q  491 gcagc-tca--taatcatattgtaagcaagcatatat--ccaatgcctcttagaagttgaattcatagtttttgtcaattgcagaattcaattgtaaggt 585  Q
    ||||| |||  ||||||||||||||||||||||||||  ||||||||| ||||||||| ||  |||| ||| ||||||||| |||||||||||   || |    
T  31960427 gcagcatcaaataatcatattgtaagcaagcatatatatccaatgcctattagaagttaaac-cataatttatgtcaattgtagaattcaatttctagat 31960329  T
Q  586 aatcttaacttctcatgttagttatttttaatattttaaaatagaatgatctat 639  Q
    |||||||||||||||||| |||| ||||   |||||| ||||||||||||||||    
T  31960328 aatcttaacttctcatgtcagttgttttccttattttcaaatagaatgatctat 31960275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 31964618 - 31964451
Alignment:
Q  9 taagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcaggtatttcaaattctaacaat 108  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||| |||||||||||| || |||||||||||||  | || ||||||||||||||||||    
T  31964618 taagctctcacaagatgtctcagaaatgcttatggcaatatatatactcaaataaaccaattcaaacaattcctcaactggcatttcaaattctaacaat 31964519  T
Q  109 ttcgtatctgcgcgaaaacaaagtaaccctcaataatgatgtttgagaggcaaggaattcaacctcat 176  Q
    |||||||| || ||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||    
T  31964518 ttcgtatccgcacgaaaacaaagtaactcttaataatgatttttgagaggcaaggatttcaacctcat 31964451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 888 - 1072
Target Start/End: Complemental strand, 31967157 - 31966961
Alignment:
Q  888 tgtgctcgccaaatttgtttatattaaaattgatctctaaatataatattttgtcctta-tttgagaggaaataaaatt-aatattctacattattatag 985  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||    
T  31967157 tgtgctcgccaaatttgtttatattaaaattgatctctaaatataatattttgtacttattttgagaagaaataaaattaaatattctacattattatag 31967058  T
Q  986 ggactgtttc--aacgactaaa-ttttcaaggagtaaataaacac----ataaacaa--caaacagc-aaaatcatggtatgtatgacaatatataa 1072  Q
    ||||||||||  |||||||||| |||||||||||||||  || ||    ||||||||   ||||||| ||||||||||||| |||||||||||||||    
T  31967057 ggactgtttcaaaacgactaaatttttcaaggagtaaaacaaaacaacaataaacaaacaaaacagcaaaaatcatggtatatatgacaatatataa 31966961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 733 - 838
Target Start/End: Complemental strand, 31960263 - 31960154
Alignment:
Q  733 caacaccaaattcaaatccaatttgaaatgaaaga----atttttattttaaatggatgatttgtagtcacttttatatatcaaggtttattcttttgaa 828  Q
    |||||||||||||||| |||||||| ||| |||||     ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  31960263 caacaccaaattcaaaaccaatttgtaatcaaagatttttttttttttttaaatggatcatttgtagtcacttttatatatcaaggtttattcttttcaa 31960164  T
Q  829 atagtacaca 838  Q
    ||||||||||    
T  31960163 atagtacaca 31960154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 31958570 - 31958503
Alignment:
Q  9 taagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaaca 76  Q
    ||||||||||||| | |||||| |||||||||||||| | |||||||||| ||||||| |||||||||    
T  31958570 taagctctcccaatcagtctcacaaatgcttatggcagtcgatatgctcagataaaccaatccaaaca 31958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 889 - 929
Target Start/End: Complemental strand, 31960124 - 31960084
Alignment:
Q  889 gtgctcgccaaatttgtttatattaaaattgatctctaaat 929  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  31960124 gtgctccccaaatttgtttatattaaaattgatctctaaat 31960084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 32597867 - 32597924
Alignment:
Q  690 attattatcatttcaaaaatgatgataaatcagtttaatcaaacaacaccaaattcaa 747  Q
    |||| |||||||||||||||||  ||||| || |||||||||| ||||||||||||||    
T  32597867 attaatatcatttcaaaaatgactataaaccaatttaatcaaagaacaccaaattcaa 32597924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 495 - 546
Target Start/End: Complemental strand, 20998385 - 20998334
Alignment:
Q  495 ctcataatcatattgtaagcaagcatatatccaatgcctcttagaagttgaa 546  Q
    ||||||||| || | ||||||||||| |||||| ||||||||||||||||||    
T  20998385 ctcataatcttactataagcaagcatctatccattgcctcttagaagttgaa 20998334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 971 - 1020
Target Start/End: Complemental strand, 31963166 - 31963114
Alignment:
Q  971 tctacattattatagggactgtttca--acgactaaa-ttttcaaggagtaaa 1020  Q
    ||||||||||||||||||| ||||||  ||||||||| |||||||||||||||    
T  31963166 tctacattattatagggacggtttcaatacgactaaatttttcaaggagtaaa 31963114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0848 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 3260 - 3320
Alignment:
Q  477 aaaagaataattcagcagctcataatcatattgtaagcaagcatatatccaatgcctctta 537  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| ||||||||||||||||    
T  3260 aaaagaataattcaataagtcataatcatattgtaagcaagcatttatccaatgcctctta 3320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 477 - 537
Target Start/End: Complemental strand, 47392623 - 47392563
Alignment:
Q  477 aaaagaataattcagcagctcataatcatattgtaagcaagcatatatccaatgcctctta 537  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| ||||||||||||||||    
T  47392623 aaaagaataattcaataagtcataatcatattgtaagcaagcatttatccaatgcctctta 47392563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 35588003 - 35587955
Alignment:
Q  485 aattcagcagctcataatcatattgtaagcaagcatatatccaatgcct 533  Q
    ||||||||| |||||| |||||||||||||| |||| ||||||||||||    
T  35588003 aattcagcaactcatagtcatattgtaagcaggcatttatccaatgcct 35587955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 30935698 - 30935632
Alignment:
Q  481 gaataattcagcagctcataatc--atattgtaagcaagcatatatccaatgcctcttagaagttgaa 546  Q
    |||||||||| | ||||||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  30935698 gaataattcaacggctcataatcgtatattgtaagcaag-atttatccaatgcatcttagaagttgaa 30935632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 7380102 - 7380142
Alignment:
Q  496 tcataatcatattgtaagcaagcatatatccaatgcctctt 536  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  7380102 tcataatcatattgtaagcaagcatttatccaatgcttctt 7380142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 11689 - 11739
Alignment:
Q  493 agctcataatcatattgtaagcaagcatatatccaatgcctcttagaagtt 543  Q
    |||||| ||||||||||||||||||||| ||| ||||| || |||||||||    
T  11689 agctcaaaatcatattgtaagcaagcatttattcaatgactattagaagtt 11739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 4549527 - 4549462
Alignment:
Q  9 taagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaa 74  Q
    ||||||||||||| | |||||||||||||||||| || | ||||  ||||||||| || |||||||    
T  4549527 taagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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