View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5104-Insertion-10 (Length: 328)
Name: NF5104-Insertion-10
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 43129605 - 43129925
Alignment:
| Q |
8 |
cgtcggatatagctcatccactttagtcacactcggtggctgcccaagctcatcacgggcttctttagctccggttataaccgcccttaacggaaccgtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43129605 |
cgtcggatatagctcatccactttagtcacactcggtggctgcccaagctcatcacgggcttctttagctccggttataactgcccttaacggaaccgtt |
43129704 |
T |
|
| Q |
108 |
agtttactcccaggtggaacggtttctggtgatatatattgtctccgtgatagaatggaaagcccaacactttggttgggcctggtgggctttattataa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43129705 |
agtttactcccaggtggaacggtttctggtgatatattttgtctccgtgatagaatggaaagcccaacactctggttgggcctggtgggctttattataa |
43129804 |
T |
|
| Q |
208 |
tcgcgtattgtttagtaaaaaacgtgaaaggagcaatgatatacggaatcgttttcgtaacagcaatttcgtggtttcgaaacacgaaagtaacggcgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43129805 |
tcgcgtattgtttagtaaaaaacgtgaaaggagcaatgatatacggaatcgttttcgtaacagcaatttcgtggtttcgaaacacgaaagtaacggcgtt |
43129904 |
T |
|
| Q |
308 |
tcctaacagcgccgccggtga |
328 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43129905 |
tcctaacagcgccgccggtga |
43129925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University