View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104-Insertion-12 (Length: 319)
Name: NF5104-Insertion-12
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 10249063 - 10248752
Alignment:
| Q |
8 |
actctggcaacaacctaccagacttgtacctcacaccacatgcattgcatagtgtttttggtcccaatggtcctgccctccattgtggggtcctttgtga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10249063 |
actctggcaacaacctaccagacttgtacctcacaccacatgcattgcatagtgtttttggtcccaatggtcctgccctccattgtggggtcctttgtga |
10248964 |
T |
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| Q |
108 |
caaacaatgagtgcaccttcttgcatttggaatatgttcctcatcatcatcattaacattctcactattcttaacttgaataattccaacctcataactc |
207 |
Q |
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| T |
10248963 |
caaacaatgagtgcaccttcttgcatttggaatatgttcctcatcatcatcattaacattctcactattcttaacttgaataattccaacctcataactc |
10248864 |
T |
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| Q |
208 |
tctttcttcacccttctttttgcttctttctgatctccgcacgcaacaacagagactttttgctcgtttttcggagcaatgagttcgctatcggctaacc |
307 |
Q |
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| T |
10248863 |
tctttcttcacccttctttttgcttctttctgatctccgtacgcaactgcagagactttttgctcgtttttcggagcaatgagttcgctatcggctaacc |
10248764 |
T |
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| Q |
308 |
aataagcttgtt |
319 |
Q |
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|||||||||||| |
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| T |
10248763 |
aataagcttgtt |
10248752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 33075144 - 33075266
Alignment:
| Q |
8 |
actctggcaacaacctaccagacttgtacctcacaccacatgcattgcatagtgtttttggtcccaatggtcctgccctccattgtggggtcctttgtga |
107 |
Q |
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| T |
33075144 |
actctggcaacaacctaccagatttgtacctcacaccacatgcattgcatagtgtctttgggcctaatgggcctgccctccattgtggggtcctttgtga |
33075243 |
T |
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| Q |
108 |
caaacaatgagtgcaccttcttg |
130 |
Q |
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| T |
33075244 |
caaacaatgtgtacacctccttg |
33075266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 4315023 - 4315097
Alignment:
| Q |
8 |
actctggcaacaacctaccagacttgtacctcacaccacatgcattgcatagtgtttttggtcccaatggtcctg |
82 |
Q |
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|||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
4315023 |
actccggcaccaacctaccggacttaaacctcacaccacaagcattgcatagtgttttcggtcccatcggtcctg |
4315097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 42714592 - 42714522
Alignment:
| Q |
25 |
ccagacttgtacctcacaccacatgcattgcatagtgtttttggtcccaatggtcctgccctccattgtgg |
95 |
Q |
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| T |
42714592 |
ccagacttgtaccgaacaccgcaagcattgcagagtgtttttggccccattggacctgccctccattgtgg |
42714522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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