View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104-Insertion-13 (Length: 318)
Name: NF5104-Insertion-13
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 8750219 - 8750096
Alignment:
| Q |
194 |
aattaaaaaattacacacatgacatctcagtcatttaagtgaggtgtcacttgtgtattgattggataaaaattgatccgggggaccaaaactgcaaaat |
293 |
Q |
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| T |
8750219 |
aattaaaaaattacacacgtgacatctcagtcatttaagtgaggtgtcacttgtgtattgactggataaaaattgatcc-ggggaccaaaactgcaaaat |
8750121 |
T |
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| Q |
294 |
gggctaaacttatgaagctgagttg |
318 |
Q |
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| T |
8750120 |
gggctaaacttatggagctgagttg |
8750096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 8750403 - 8750294
Alignment:
| Q |
8 |
gataaggcatagacaaagttgtagttactctcatatttgctttctatttgctgggcttggttatgagaagaaagagatagatgttcatcccatctccacg |
107 |
Q |
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| T |
8750403 |
gataaggcatagacaaagttgtagttgctctcatatttgctttctatttgctgggtttggttatgaggagaaagagatagatgttcatcccatctccacg |
8750304 |
T |
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| Q |
108 |
attctttgcc |
117 |
Q |
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| T |
8750303 |
attctttgcc |
8750294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 54548068 - 54547994
Alignment:
| Q |
194 |
aattaaaaaattacacacatgacatctcagtcatttaagtgaggtgtcacttgtgtattgattggataaaaattg |
268 |
Q |
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| T |
54548068 |
aattaaaaaattacacacgtggcatcctagtcacttaagcgagatgtcacatgtgtgttggttggatcaaaattg |
54547994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 18160091 - 18160130
Alignment:
| Q |
262 |
aaaattgatccgggggaccaaaactgcaaaatgggctaaac |
302 |
Q |
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| T |
18160091 |
aaaattgatccgggggatcaaaactgcaaaa-gggctaaac |
18160130 |
T |
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