View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104-Insertion-2 (Length: 1068)

Name: NF5104-Insertion-2
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104-Insertion-2
NF5104-Insertion-2
[»] chr8 (1 HSPs)
chr8 (8-925)||(42005295-42006218)
[»] chr5 (2 HSPs)
chr5 (576-912)||(10018748-10019080)
chr5 (637-698)||(5547835-5547896)
[»] chr3 (6 HSPs)
chr3 (618-858)||(33819360-33819599)
chr3 (9-155)||(18346154-18346303)
chr3 (9-155)||(18357982-18358132)
chr3 (757-852)||(43337426-43337521)
chr3 (655-706)||(16970448-16970499)
chr3 (652-706)||(16240393-16240447)
[»] chr7 (2 HSPs)
chr7 (632-849)||(49076388-49076600)
chr7 (655-702)||(32057332-32057379)
[»] chr4 (1 HSPs)
chr4 (575-857)||(16542778-16543053)
[»] chr1 (2 HSPs)
chr1 (574-715)||(49171816-49171955)
chr1 (657-705)||(2899913-2899961)
[»] chr6 (3 HSPs)
chr6 (574-754)||(29816598-29816774)
chr6 (671-706)||(1881931-1881966)
chr6 (657-706)||(33691502-33691551)
[»] scaffold0085 (1 HSPs)
scaffold0085 (655-804)||(47510-47653)
[»] chr2 (2 HSPs)
chr2 (633-795)||(42491108-42491268)
chr2 (813-854)||(42490426-42490467)


Alignment Details
Target: chr8 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 8 - 925
Target Start/End: Original strand, 42005295 - 42006218
Alignment:
Q  8 acaacaaccatttcctaaataagtctcaccatttagaaaaaatgttataatttcaccactacatgcttggagcttgaagagtgactgccaacaattagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005295 acaacaaccatttcctaaataagtctcaccatttagaaaaaatgttataatttcaccactacatgcttggagcttgaagagtgactgccaacaattagaa 42005394  T
Q  108 ggctcgccactcaccttcaatcttgcttcaaggctcatcaagttggaagggttagagtgttgtctagactccaccgtatatgttgatggaaccaaagcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005395 ggctcgccactcaccttcaatcttgcttcaaggctcatcaagttggaagggttagagtgttgtctagactccaccgtatatgttgatggaaccaaagcaa 42005494  T
Q  208 tgatcacaagagcaacaataataaaaactttgtgagagaaagccattttctttttatattttcaatgattagttt-ggcgaaaacatgcttataaggtcn 306  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  42005495 tgatcacaagagcaacaataataaaaactttgtgagaggaagccattttctttttatattttcaatgattagttttggcgaaaacatgcttataaggtct 42005594  T
Q  307 nnnnnnnnnnncactcctatagctaggggtatttgatttgtaacgattagatgaaaagatgaagggtgtaaatataattgtgcaattgtaacatataaga 406  Q
               ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005595 atatttata--cactcctatagctaggggtatttaatttgtaacgattggatgaaaagatgaagggtgtaaatataattgtgcaattgtaacatataaga 42005692  T
Q  407 taagactagtgaatcgtcgtaaaagaaaattaaaaatagaagactagtgaataggaaaagatgagcttcttatgtgctgtgaggatgaagatttaacttt 506  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005693 taagactagtgaatcgtcataaaagaaaattaaaaattgaagactagtgaataggaaaagatgagcttcttatgtgctgtgaggatgaagatttaacttt 42005792  T
Q  507 ttggtagttaaatgccaattattttcttacgatcgatttgtatcctttaaaattattttcnnnnnnngataacaagagggccttag-ccccagaaaaaag 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||| ||||||     
T  42005793 ttggtagttaaatgccaattattttcttacgatcgatttgtatcctttaaaattattttctttttttgataacaagagggccttagcccccaaaaaaaaa 42005892  T
Q  606 agagaactaccacttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaa 705  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005893 agagaactaccatttaataaaaggcggagtcaaaataccaatagagtcagctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaa 42005992  T
Q  706 gaataacctcttatcacatgtcatattcgccaatgcatcgacacatttgtttgcttcacgatacgaatgccgaatcttgatgtcccactccaactccaat 805  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  42005993 gaataatctcttatcacatgtcatattcgccaaagcatcggcacatttgtttgcttcacgatacgaacgccgaatcttgatgtccaactccaactccaat 42006092  T
Q  806 aatcttctaatattttgcaataagctccgaccatccacatttcctccttccct---aagcaagtatcggaagctacag-gcaagaataaatatggagct- 900  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||| || ||||||||||  ||||||| |||||| ||||     
T  42006093 aatcttctaatattttgcaataagctccaaccatccacatttcctccttccctctaaagcaagtgtc-gaagctacagcccaagaatcaatatgaagctc 42006191  T
Q  901 cactttatgaaa--catgcaatctagc 925  Q
    ||||||||||||  |||||||||||||    
T  42006192 cactttatgaaaaccatgcaatctagc 42006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 576 - 912
Target Start/End: Complemental strand, 10019080 - 10018748
Alignment:
Q  576 taacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaatt 675  Q
    |||||||||||||||||||| | ||||||||||| | | || ||||| |||| |||||||| |||||| || |||||| |||||||||||||||||||||    
T  10019080 taacaagagggccttagcccaa-aaaaaagagaggattgccgcttaacaaaacgcggagtcgaaatactaatagagtcagctaaaaataacaaattaatt 10018982  T
Q  676 tgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgccaatgcatcgacacatttgtttgcttcacgatacgaatgc 775  Q
    |||| ||||||||| |||||||||||||||||||||||||  ||| |||| |||||| ||     |||||||||||||||||||||||||||| ||||      
T  10018981 tgagtaggacaatgttcatataacatcaaagaataacctc-catctcatgccatatttgc-----catcgacacatttgtttgcttcacgatatgaatat 10018888  T
Q  776 cgaatcttgatgtcccactccaactccaataatcttctaatattttgcaataagctccgaccatccacatttcctccttc-cct-aagcaagtatcggaa 873  Q
     |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| | |||||||||| ||| |||||||| || |||    
T  10018887 tgaatcttgatctcccactccaactccaacaattttctaatattttgcaataagctccaaccatccagagttcctccttctcctaaagcaagtgtc-gaa 10018789  T
Q  874 gctacag-gcaagaataaatatggagct-cactttatgaaa 912  Q
    ||||| |  ||| ||| ||||||||||| ||||||||||||    
T  10018788 gctactgcccaaaaatcaatatggagctccactttatgaaa 10018748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 5547896 - 5547835
Alignment:
Q  637 aaaataccaacagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataa 698  Q
    |||||||||| ||| || ||||| | ||||||| ||||||||||||||||||||||||||||    
T  5547896 aaaataccaatagaatcagctaacattaacaaactaatttgagcaggacaatgctcatataa 5547835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 5e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 618 - 858
Target Start/End: Original strand, 33819360 - 33819599
Alignment:
Q  618 cttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctctt 717  Q
    ||||| |||| |||||||  |||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  33819360 cttaacaaaatgcggagttgaaatactaatagagtcagctaaaaataacaaattaattttagcaggacaatgctcatataacatcaaagaataacctcc- 33819458  T
Q  718 atcacatgtcatattcgccaatgcatcgacacatttgtttgcttcacgatacgaatgccgaatcttgatgtcccactccaactccaataatcttctaata 817  Q
    |||||||| | ||||||||||  |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  33819459 atcacatgccttattcgccaacacatcgacatatttgttttcttcacgatacgaatgccgaatcttgatctcccactccaactccaataatcttataata 33819558  T
Q  818 ttttgcaataagctccgaccatccacatttcctccttccct 858  Q
    ||||| |  ||||||| || ||||||| | |||||||||||    
T  33819559 ttttggagcaagctccaacaatccacactccctccttccct 33819599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 18346303 - 18346154
Alignment:
Q  9 caacaaccatttcctaaataagtctcaccatttagaaaaaatgttataatttcaccactacatgcttggagcttgaagagtgactgccaacaattagaag 108  Q
    ||||||||||  || || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||    
T  18346303 caacaaccatagcccaagtaagtctcaccatttagaaaaaatgtaataatttcaccactacatgcttgaagcttaaatagtgactcccaacaattagaag 18346204  T
Q  109 gc---tcgccactcaccttcaatcttgcttcaaggctcatcaagttggaa 155  Q
    ||   || ||||||||||||||||||||||||||||||||||| ||||||    
T  18346203 gctcatcaccactcaccttcaatcttgcttcaaggctcatcaaattggaa 18346154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 18358132 - 18357982
Alignment:
Q  9 caacaaccatttcctaaataagtctcaccatttagaaaaaatgttataatttcacc-actacatgcttggagcttgaagagtgactgccaacaattagaa 107  Q
    ||||||||||  || || |||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||| || ||||||| |||||||||||||    
T  18358132 caacaaccatagcccaagtaagtctcaccatttagaaaaaatgtaacaatttcacccactacatgcttgaagcttaaatagtgactcccaacaattagaa 18358033  T
Q  108 ggctcg---ccactcaccttcaatcttgcttcaaggctcatcaagttggaa 155  Q
    |||||    ||||||||||||||||||||||||||||||||||| ||||||    
T  18358032 ggctcatcaccactcaccttcaatcttgcttcaaggctcatcaaattggaa 18357982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 757 - 852
Target Start/End: Complemental strand, 43337521 - 43337426
Alignment:
Q  757 tgcttcacgatacgaatgccgaatcttgatgtcccactccaactccaataatcttctaatattttgcaataagctccgaccatccacatttcctcc 852  Q
    ||||||||||||||||||| |||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  43337521 tgcttcacgatacgaatgctgaatcttgatcttccactccaacttcaataatcttttaatattttgcaataagctccaaccatccacagttcctcc 43337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 655 - 706
Target Start/End: Original strand, 16970448 - 16970499
Alignment:
Q  655 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 706  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  16970448 gctaaaaacaacatactaatttgagcaggacaatgctcatataacatcaaag 16970499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 706
Target Start/End: Original strand, 16240393 - 16240447
Alignment:
Q  652 tcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 706  Q
    |||| |||||| || |||||||| ||||| |||||||||| ||||||||||||||    
T  16240393 tcggttaaaaacaataaattaatctgagctggacaatgcttatataacatcaaag 16240447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 8e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 632 - 849
Target Start/End: Original strand, 49076388 - 49076600
Alignment:
Q  632 gagtcaaaataccaacagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatat 731  Q
    ||||||||||| ||| | |||| ||||||||||| |||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49076388 gagtcaaaatatcaataaagtcagctaaaaataataaattaatttg----cgacaatgctcatataacatcaaagaataacct-ttatcacatgtcatat 49076482  T
Q  732 tcgccaatgcatcgacacatttgtttgcttcacgatacgaatgccgaatcttgatgtcccactccaactccaataatcttctaatattttgcaataagct 831  Q
    ||||||| ||||  ||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||    
T  49076483 tcgccaacgcattaacacatttgtttgcttcacgatacgaatgtcgaatctcgatcttccacttcaactccaataatcttctaatattttgcaataagct 49076582  T
Q  832 ccgaccatccacatttcc 849  Q
    || ||| |||||| ||||    
T  49076583 ccaaccttccacacttcc 49076600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 702
Target Start/End: Original strand, 32057332 - 32057379
Alignment:
Q  655 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatc 702  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||    
T  32057332 gctaaaaataacatattaatttgagcaggacaatagtcgtataacatc 32057379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 575 - 857
Target Start/End: Complemental strand, 16543053 - 16542778
Alignment:
Q  575 ataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaat 674  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| | ||| ||||    ||||| |||||||||| ||||  || |||||||| ||||||||    
T  16543053 ataacaagagggccttagccccaaaaaaaagatagaacaaccgcataacaaaacatagagtcgaaataccaacggagttagccaaaaataataaattaat 16542954  T
Q  675 ttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgccaatgcatcgacacatttgtttgcttcacgatacgaatg 774  Q
    ||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||||| |||||      || ||||||    
T  16542953 ttgagcaagataatgctcatataacatcaaagaataacctc-catcacatgtcatattcgccaacgcattgacacatttatttgc------atccgaatg 16542861  T
Q  775 ccgaatcttgatgtcccactccaactccaataatcttctaatattttgcaataagctccgaccatccacatttcctccttccc 857  Q
     | ||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||    
T  16542860 tcaaatcttgatctctcactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttccc 16542778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 574 - 715
Target Start/End: Complemental strand, 49171955 - 49171816
Alignment:
Q  574 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaa 673  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||| || ||||||||| ||||||   ||||  |||||||||||    
T  49171955 gataacaagagggccttagcccg-gaaaaaagagagaactaccacttaacaaaatgcggaatcgaaataccaatagagtcaattaaag-taacaaattaa 49171858  T
Q  674 tttgagcaggacaatgctcatataacatcaaagaataacctc 715  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  49171857 tttgagcacgacaatgctcatataacatcaaagaataacctc 49171816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 657 - 705
Target Start/End: Original strand, 2899913 - 2899961
Alignment:
Q  657 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaa 705  Q
    ||||||||||| | |||||||||||| ||||||||||||||| ||||||    
T  2899913 taaaaataacatactaatttgagcagtacaatgctcatataatatcaaa 2899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 574 - 754
Target Start/End: Original strand, 29816598 - 29816774
Alignment:
Q  574 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaacagagtcggctaaaaataacaaattaa 673  Q
    ||||| ||||| |||||||||| ||||||| |||||||||||| ||||| |||  ||| |||| ||||||| | | |||| ||||||||||| |||| ||    
T  29816598 gataaaaagagagccttagccc-agaaaaa-gagagaactaccgcttaacaaattgcgcagtcgaaataccgataaagtcagctaaaaataataaataaa 29816695  T
Q  674 tttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgccaatgcatcgacacatttg 754  Q
    || ||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||  ||||||||    
T  29816696 tt-gagcaagacaatgctcatataacatcaaataataacct-tcatcacatgtcatattcgccaacgcatcagcacatttg 29816774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 671 - 706
Target Start/End: Original strand, 1881931 - 1881966
Alignment:
Q  671 taatttgagcaggacaatgctcatataacatcaaag 706  Q
    ||||||||||||||||||||||||||||||||||||    
T  1881931 taatttgagcaggacaatgctcatataacatcaaag 1881966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 657 - 706
Target Start/End: Original strand, 33691502 - 33691551
Alignment:
Q  657 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 706  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  33691502 taaaaataacatattaatttgagcaggaccattttcatataacatcaaag 33691551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 655 - 804
Target Start/End: Complemental strand, 47653 - 47510
Alignment:
Q  655 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgccaatgcatcgacacatttg 754  Q
    |||| |||||| ||||||| ||||  || ||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||| | |||| || |||||    
T  47653 gctagaaataaaaaattaacttgaagagtacaatgctcatataatatcaaagaaaaacctcc-atcacatgtcatattcgccaacgtatcggcatatttg 47555  T
Q  755 tttgcttcacgatacgaatgccgaatcttgatgtcccactccaactccaa 804  Q
    |||||||     |||||||||||||||||||| |||||||||||||||||    
T  47554 tttgctt-----tacgaatgccgaatcttgatctcccactccaactccaa 47510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 633 - 795
Target Start/End: Complemental strand, 42491268 - 42491108
Alignment:
Q  633 agtcaaaataccaacagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatatt 732  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||| |||| || ||||||| | || ||||||||||  |||||  |||||||| ||||||    
T  42491268 agtcgaaataccaaaagagtcggttaaaaataaaaaattaattttagcatgataatgctcctgta-catcaaagaaacacctcc-atcacatgccatatt 42491171  T
Q  733 cgccaatgcatcgacacatttgtttgcttcacgatacgaatgccgaatcttgatgtcccactc 795  Q
    || ||  |||||| ||||||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  42491170 cgtcagcgcatcggcacatttatttgcttcatgatatgaatgccgaatcttgatctcccactc 42491108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 813 - 854
Target Start/End: Complemental strand, 42490467 - 42490426
Alignment:
Q  813 taatattttgcaataagctccgaccatccacatttcctcctt 854  Q
    ||||||||||||||||||||| ||||||||||  ||||||||    
T  42490467 taatattttgcaataagctccaaccatccacaactcctcctt 42490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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