View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104-Insertion-5 (Length: 540)

Name: NF5104-Insertion-5
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104-Insertion-5
NF5104-Insertion-5
[»] chr4 (14 HSPs)
chr4 (275-402)||(46024953-46025083)
chr4 (8-78)||(46305958-46306028)
chr4 (275-361)||(46306535-46306617)
chr4 (449-488)||(46306624-46306663)
chr4 (8-78)||(46025371-46025441)
chr4 (329-402)||(46263158-46263238)
chr4 (75-127)||(46306063-46306111)
chr4 (8-78)||(46262217-46262287)
chr4 (275-333)||(46262575-46262629)
chr4 (226-269)||(46025129-46025172)
chr4 (226-269)||(46262486-46262529)
chr4 (226-269)||(46306446-46306489)
chr4 (399-448)||(46302775-46302822)
chr4 (28-78)||(46306197-46306247)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 275 - 402
Target Start/End: Complemental strand, 46025083 - 46024953
Alignment:
Q  275 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttc-------tttgtctttt 367  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| ||||||||||||||||||| |||       ||||||||||    
T  46025083 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctcattccctcttttttgtctttt 46024988  T
Q  368 aggaaccaacatccatttgataatcacgacaagaa 402  Q
    |||||||||||| |||||||||||||| |||||||    
T  46024987 aggaaccaacattcatttgataatcaccacaagaa 46024953  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 46305958 - 46306028
Alignment:
Q  8 ctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46305958 ctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctagaaat 46306028  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 46306535 - 46306617
Alignment:
Q  275 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttctttg 361  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  46306535 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctctttctttg 46306617  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 488
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
Q  449 tatacactctggccaaaaacatataagttacgcataacat 488  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306624 tatacactctggccaaaaacatataagttacgcataacat 46306663  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 46025441 - 46025371
Alignment:
Q  8 ctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 78  Q
    |||||||||| || ||||| ||||||||||| || |||||||||||| ||||||||| |||||||| ||||    
T  46025441 ctattagcacttgtaaattcctccttgtactcgacatttgaaatcaataaaattgtaagttttctagaaat 46025371  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 46263158 - 46263238
Alignment:
Q  329 aacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 402  Q
    ||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46263158 aacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46263238  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 46306063 - 46306111
Alignment:
Q  75 aaattgtattaaggaagctcctacaagtgtgatatatagattaatcgattcct 127  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  46306063 aaattgtattaaggaagctcctacaagtgtg----atagattaatcgattcct 46306111  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 46262217 - 46262287
Alignment:
Q  8 ctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 78  Q
    |||||||||| || ||||| ||||||||| | || |||||||||||| ||||||||| |||||||| ||||    
T  46262217 ctattagcacttgtaaattcctccttgtagtcgacatttgaaatcaataaaattgtaagttttctagaaat 46262287  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 46262575 - 46262629
Alignment:
Q  275 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacat 333  Q
    |||||||| |||||||||||||| |||||||    ||||||||||||||||||||||||    
T  46262575 caccaaccacaagttctactgcacatgattc----acgtccttggccttttgtaaacat 46262629  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 46025172 - 46025129
Alignment:
Q  226 tcataatttttatcgagttacaagacaacatgaatacaattttt 269  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46025172 tcataatttttatcaatatacaagacaacatgaatacaattttt 46025129  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 46262486 - 46262529
Alignment:
Q  226 tcataatttttatcgagttacaagacaacatgaatacaattttt 269  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46262486 tcataatttttatcaatatacaagacaacatgaatacaattttt 46262529  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 46306446 - 46306489
Alignment:
Q  226 tcataatttttatcgagttacaagacaacatgaatacaattttt 269  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46306446 tcataatttttatcaatatacaagacaacatgaatacaattttt 46306489  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
Q  399 agaagattattattagtaaacaacatgcagaaagaagttgagtctttata 448  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  46302775 agaagattatta--aataaccaacatgcagaaagaagttgagtctttata 46302822  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 46306197 - 46306247
Alignment:
Q  28 ctccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 78  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||| ||||    
T  46306197 ctccttgtactcgacatttgaaatcaataaaattgtaagttttctagaaat 46306247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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