View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104-Insertion-6 (Length: 535)
Name: NF5104-Insertion-6
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 204 - 535
Target Start/End: Original strand, 53147821 - 53148150
Alignment:
| Q |
204 |
attttaatgcattttaagttaagtgtgggcatcgaaatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
303 |
Q |
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| T |
53147821 |
attttaatgcattttaagttaagtgtgggcatcgatatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
53147920 |
T |
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| Q |
304 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcgtcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
403 |
Q |
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| T |
53147921 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcatcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
53148020 |
T |
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| Q |
404 |
ttcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacattcattaatctcaattgagtgatgag |
503 |
Q |
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| T |
53148021 |
ttcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaa----cattaatctcaattgagtgatgag |
53148116 |
T |
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| Q |
504 |
aaacataaa--tttaccttgcaagcaatcacaat |
535 |
Q |
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| T |
53148117 |
aaacataaatttttaccttgcaagcaatcacaat |
53148150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 53147603 - 53147787
Alignment:
| Q |
8 |
gtcccccctacatgcctttcaatcatcatcatgtttcccaagatctacagatagcaaaaagtatgagggatccagaaagtcaggaatgttgacgtatcac |
107 |
Q |
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| T |
53147603 |
gtcccccctacatgcctttcaatcatcatcatgtttcccaagatctacagatagcaaaaagtatgagggatccagaaagtcaggaatgttgacgtatcac |
53147702 |
T |
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| Q |
108 |
tgatttttatttatttccgtatcatatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
193 |
Q |
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| T |
53147703 |
tga-ttttatttatttccgtatcatatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
53147787 |
T |
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