View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104-Insertion-7 (Length: 508)
Name: NF5104-Insertion-7
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Complemental strand, 28622772 - 28622270
Alignment:
| Q |
6 |
cactcccttcaccactgtcaccttaaccagcaccaccacccgccgctactctttcacctctcacactcctcaattcccctattcttctcgcttttccacc |
105 |
Q |
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| T |
28622772 |
cactcccttcaccactgtcaccttaaccagcaccaccacccgccgctactctttcacctctcacactcctcaattcccctattcttctcgcttttccatc |
28622673 |
T |
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| Q |
106 |
actccatcttatctccgtttccgcattccatgctccaacaaaaccaccggcaaatcaacagaatccaccgatctcgagttggtagattgcgttggaacag |
205 |
Q |
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| T |
28622672 |
actccatcttatctccatttccgcattccatgctccaacaaaaccaccggcaaatcaacagaatccaccgatctcgagttggtagattgcgtcggaacag |
28622573 |
T |
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| Q |
206 |
gacaagatgtggagtgtctcctaaccgaagaagacgaaggaaaaacaaaagatgaatcatcatcgaagagactgtgccttggggaagcgttatgggaagg |
305 |
Q |
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| T |
28622572 |
gacaagatgtggagtgtctcctaaccgaagaagacgaaggaaaaacaaaagatgaatcatcatcgaagagactgtgccttggggaagcgttatgggaagg |
28622473 |
T |
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| Q |
306 |
tgcagtgttaatatcaccgttctttttctggggaactgcaatggtggcgatgaaagaagtgattcctaattacggtccttttttcgttgcgtcttttcgt |
405 |
Q |
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| T |
28622472 |
tgcagtgttaatatcaccgttctttttctggggaactgcaatggtggcgatgaaagaagtgattcctaattacggtccttttttcgttgcgtcttttcgt |
28622373 |
T |
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| Q |
406 |
ttaattccagctgggtttcttcttgttgcttttgctgcttttagaggaagggctttaccttctggtttcaatgcttggctttccatcgcgatatttgcac |
505 |
Q |
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| T |
28622372 |
ttaattccagctgggtttcttcttgttgcttttgctgcttttagaggaagggctttaccttctggtttcaatgcttggctttccatcgcgatatttgcac |
28622273 |
T |
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| Q |
506 |
ttg |
508 |
Q |
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| T |
28622272 |
ttg |
28622270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 294 - 503
Target Start/End: Complemental strand, 28618187 - 28617978
Alignment:
| Q |
294 |
gttatgggaaggtgcagtgttaatatcaccgttctttttctggggaactgcaatggtggcgatgaaagaagtgattcctaattacggtccttttttcgtt |
393 |
Q |
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| T |
28618187 |
gttatggcaaggtgctgtgttaatatcgccgttcttcttctggggcacttccatggtggcaatgaaagaagtgattccgaaacacggtcctttttttgtt |
28618088 |
T |
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| Q |
394 |
gcgtcttttcgtttaattccagctgggtttcttcttgttgcttttgctgcttttagaggaagggctttaccttctggtttcaatgcttggctttccatcg |
493 |
Q |
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| T |
28618087 |
tcttcttttcgtctcattcctgccgggttccttcttgttgcttttgctgcttctagaagaagggagtttccttctagcttcaatgcctggctctccatcg |
28617988 |
T |
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| Q |
494 |
cgatatttgc |
503 |
Q |
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| T |
28617987 |
ccatatttgc |
28617978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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