View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104-Insertion-9 (Length: 365)
Name: NF5104-Insertion-9
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 29182110 - 29181757
Alignment:
| Q |
8 |
atatcaacaacgcgttagatatataataaatcaatatccactaacactaatctcacatttaattaagccttaacctttagatgttaataacgatcacgat |
107 |
Q |
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| T |
29182110 |
atatcaacaacgcgttagatatataataaatcaatatccactaacactaatctcacatttaattaagc---aacctttagatgttaataacgatcacgat |
29182014 |
T |
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| Q |
108 |
gcccttaattaacttgtcacaaaaaccattgatcaacatatttatccacttaaagattatttgaaggtcatgatgcccttaattaaattttcatcatgcc |
207 |
Q |
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| T |
29182013 |
gcccttaattaacttgtcacaaaaaccattgatcaacatatttatccactta--gattatttgaaggtcatgatgtccttaattaaattttcatcatgcc |
29181916 |
T |
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| Q |
208 |
cttcaaacaaacgtttatattcatccctatatgaacatcatttcagtttaaagtgtttatattcaacaatattgcc-aacagtccagacaacagacaata |
306 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
29181915 |
cttcaaataaacgtttatattcatccctatatggacatcatttcggtttaaagtgtttatattcaacaacattgccaaacagtccacacaacagacaata |
29181816 |
T |
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| Q |
307 |
taacatacaaggttcaaataaatagtttatctattcttcgtattttatcatatcatgtc |
365 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29181815 |
taacatacaaggttcaaataaatagtttatctatttttcgtattttatcatatcatgtc |
29181757 |
T |
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