View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_high_18 (Length: 232)
Name: NF5104_high_18
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 9631017 - 9631111
Alignment:
| Q |
32 |
aatgaataattatcgtgttaatgtgattttgttttggtacatagtaatcgtatttaaagcaaaataaattcataaatggtaccactcatcaatac |
126 |
Q |
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| T |
9631017 |
aatgaataattatcgtgttaatgtgattttgttttggtacatagtaatcgtatataaagcaaaataatttcataaatggtaccacccatcaatac |
9631111 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 9631140 - 9631215
Alignment:
| Q |
122 |
aatacggtgtacatttttgtttaannnnnnngcagaggaactgtacatatttgtttatcaacgtttcttaaggaaa |
197 |
Q |
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| T |
9631140 |
aatacggtgtacatttttgtttaatttttttgcagaggaactgtacatatttgtttatcaacgttcctttaggaaa |
9631215 |
T |
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