View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_high_20 (Length: 224)
Name: NF5104_high_20
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 53146896 - 53147108
Alignment:
| Q |
12 |
cagaacctgtgcctcctccaagggagtggcaaacttgaaaacctgacaaaattgaaagaaattttcagacttctgaataatagattgcaaatacccaagt |
111 |
Q |
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| T |
53146896 |
cagaacccgtgcctcctccaagggagtggcaaacttgaaaacctgacaaaattgaatgaaattttcagacttctgaataatagattgcaaatacccaagt |
53146995 |
T |
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| Q |
112 |
ccacaaatctaacataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcatcaaagc |
211 |
Q |
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| T |
53146996 |
ccacaaatctaacataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcatcaaagc |
53147095 |
T |
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| Q |
212 |
ataacagccccat |
224 |
Q |
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| T |
53147096 |
ataacagccccat |
53147108 |
T |
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