View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5104_high_21 (Length: 216)
Name: NF5104_high_21
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5104_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 382761 - 382970
Alignment:
| Q |
1 |
caaatggaaacattcccatataaaactccaatatactcacacctaaactccatatatcaccggcgtatgcatcgtattgtccatcgttgatatcagtgtt |
100 |
Q |
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| T |
382761 |
caaatggaaaccttcccatataaaactccaatatactcacacctaaactccatatatcacctgcgtatgcatcatattgtccatcgttgatatcggtgtt |
382860 |
T |
|
| Q |
101 |
tatcctctccggtgacatgtaagcaattgttcctacagatgaattacacggatccatcgtttgattcagaattcttcctacaccaaaatcagcaatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
382861 |
tatcctctccggtgacatgtaagcaattgttcctaccgatgaattacacggatccatcgtttgattcagaattcttcctacaccaaaatcagcaatcttc |
382960 |
T |
|
| Q |
201 |
acctgtttcc |
210 |
Q |
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|||||||||| |
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| T |
382961 |
acctgtttcc |
382970 |
T |
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