View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5104_high_4 (Length: 458)

Name: NF5104_high_4
Description: NF5104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5104_high_4
NF5104_high_4
[»] chr6 (8 HSPs)
chr6 (19-242)||(31968036-31968259)
chr6 (31-217)||(31964627-31964811)
chr6 (76-227)||(31969543-31969694)
chr6 (257-380)||(31958840-31958956)
chr6 (257-309)||(31966148-31966200)
chr6 (136-232)||(31958711-31958809)
chr6 (76-138)||(323743-323805)
chr6 (72-137)||(31672540-31672605)
[»] chr8 (2 HSPs)
chr8 (76-159)||(12224975-12225058)
chr8 (72-128)||(36643943-36643999)
[»] chr5 (4 HSPs)
chr5 (87-160)||(21782656-21782729)
chr5 (76-128)||(37063150-37063202)
chr5 (72-137)||(7096199-7096264)
chr5 (81-125)||(35960359-35960403)
[»] chr4 (3 HSPs)
chr4 (76-149)||(7368132-7368205)
chr4 (80-138)||(23676648-23676707)
chr4 (76-138)||(36734825-36734887)
[»] chr2 (2 HSPs)
chr2 (79-136)||(41240956-41241013)
chr2 (74-128)||(37033986-37034040)
[»] chr1 (4 HSPs)
chr1 (76-128)||(26184693-26184745)
chr1 (72-132)||(26293178-26293238)
chr1 (87-152)||(6265012-6265077)
chr1 (77-153)||(5150854-5150930)
[»] chr7 (3 HSPs)
chr7 (76-143)||(31002688-31002755)
chr7 (72-119)||(33601165-33601212)
chr7 (76-128)||(5006585-5006637)
[»] chr3 (5 HSPs)
chr3 (87-128)||(8697605-8697646)
chr3 (87-128)||(9049492-9049533)
chr3 (73-101)||(6241157-6241185)
chr3 (76-160)||(20192682-20192766)
chr3 (72-128)||(44284130-44284186)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 31968036 - 31968259
Alignment:
Q  19 cttaagacatgtccttaagctggttttatcatattttataagctatcaatgtgagcttatgaaaatagtttgactttattttactttttattgtaggaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  31968036 cttaagacatgtccttaagctggttttatcatattttataagctatcattgtgagcttatgaaaatagtttgactttattttattttctattgtaggaat 31968135  T
Q  119 agtttatacaaaaccacttaattaagttgtttatcaaaacatatagtttacaagaatttccccccgatataatagggaaataatattgcaaaggagattc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  31968136 agtttatacaaaaccacttaattaagttgtttatcaaaacatatagtttacaagaattttctcccgatataatagggaaataatattgcaaaggagattc 31968235  T
Q  219 aaggtatgctgcaacgcaagggat 242  Q
    |||||||||||||| |||||||||    
T  31968236 aaggtatgctgcaatgcaagggat 31968259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 31964627 - 31964811
Alignment:
Q  31 ccttaagctggttttatcatattttataagctatcaatgtgagcttatgaaaatagttt-gactttattttactttttattgtaggaatagtttatacaa 129  Q
    ||||||| || ||||| | ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||||||||||||||    
T  31964627 ccttaagttgtttttagcttattttata-gctatcaatgtgagcttatgaaaacagttttgactttattttatcttttattgtaggaatagtttatacaa 31964725  T
Q  130 aaccacttaattaagttgtttatcaaaacatatagtttacaagaatttccccccgatataatagggaaataatattgcaaaggagatt 217  Q
    |||||||||||||||| ||||||||||||  ||||||||| ||||||| |||||||||||||||||||  |||||  |||||||||||    
T  31964726 aaccacttaattaagtcgtttatcaaaac--atagtttacgagaattttcccccgatataatagggaagaaatatatcaaaggagatt 31964811  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 31969543 - 31969694
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttatcaaaacatat-agtttacaagaa 174  Q
    |||||||||||||||| |||||||||   |||||| |   ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  31969543 tatgaaaatagtttgattttattttatcatttattttgtaaatagtttataaataaccacttaattaagttgtttatcaaaacatataagtttaccagaa 31969642  T
Q  175 tttccccccgatataatagggaaataatattgcaaaggagattcaaggtatgc 227  Q
    |||   ||| |||||||||||||  ||| | ||||||||||||||||||||||    
T  31969643 ttt-ttcccaatataatagggaaggaatgtagcaaaggagattcaaggtatgc 31969694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 380
Target Start/End: Original strand, 31958840 - 31958956
Alignment:
Q  257 taacaacaattttggagggtccaactagtcttctggccgtgtaagttaaactctttagttagttaattcgaatccgagcatgcttttgcaactgcaaaac 356  Q
    ||||| || |||||||||| ||| | ||||||||||||||||||||||||| || ||||       |||| |||||||||| |||||| ||||||||| |    
T  31958840 taacagcagttttggagggcccagccagtcttctggccgtgtaagttaaacactatagt-------ttcggatccgagcatacttttgaaactgcaaacc 31958932  T
Q  357 taaaatatcctaatgacatgatgc 380  Q
     || |||||| ||||| |||||||    
T  31958933 aaacatatcccaatgatatgatgc 31958956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 31966148 - 31966200
Alignment:
Q  257 taacaacaattttggagggtccaactagtcttctggccgtgtaagttaaactc 309  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||    
T  31966148 taacaacagttttggagggtccagctagtcttctgaccgtgtaaattaaactc 31966200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 31958711 - 31958809
Alignment:
Q  136 ttaattaagttgtttatcaaaacatatagtttacaagaatttcccc--ccgatataatagggaaataatattgcaaaggagattcaaggtatgctgcaa 232  Q
    |||||||||||||||||||||||| ||||||||| ||  |||||||      ||| ||||||||  ||||| |||||||||||||||||||||| ||||    
T  31958711 ttaattaagttgtttatcaaaacagatagtttacgagtttttcccctaatattattatagggaaggaatatagcaaaggagattcaaggtatgcagcaa 31958809  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 323805 - 323743
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccactta 138  Q
    |||||||| ||||||| |||||||||  ||||| | ||| ||||| |||||||||||||||||    
T  323805 tatgaaaacagtttgaatttattttatcttttaatatagaaatagcttatacaaaaccactta 323743  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 31672540 - 31672605
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccactt 137  Q
    |||||||||||| ||||||||||||||||| ||||| |  | | ||||||||||||| || |||||    
T  31672540 agcttatgaaaacagtttgactttattttattttttgtcatggaaatagtttatacataaacactt 31672605  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 12224975 - 12225058
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttatcaaaaca 159  Q
    ||||||||||||||||||||||||||  |||| |  ||| ||||  ||||||| || | ||||||||||||||||||| |||||    
T  12224975 tatgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatccaaaca 12225058  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 36643943 - 36643999
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    ||||||||||||||||||||||||| | ||  ||||||| ||| ||||| |||||||    
T  36643943 agcttatgaaaatagtttgactttactgtatcttttattatagaaatagcttataca 36643999  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 21782656 - 21782729
Alignment:
Q  87 tttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttatcaaaacat 160  Q
    |||||||||||||||  |||| || ||| ||||| ||| ||| || ||||||||||||||||||||| ||||||    
T  21782656 tttgactttattttagcttttgttatagaaatagcttaaacataaacacttaattaagttgtttatccaaacat 21782729  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 37063150 - 37063202
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    ||||||||||||||||||||||||||  |||| || ||| |||||||||||||    
T  37063150 tatgaaaatagtttgactttattttatcttttgttatagaaatagtttataca 37063202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 7096199 - 7096264
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccactt 137  Q
    ||||||||||||| ||||||||||||||||  |||| || ||| ||||| ||||||| || |||||    
T  7096199 agcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 35960403 - 35960359
Alignment:
Q  81 aaatagtttgactttattttactttttattgtaggaatagtttat 125  Q
    |||||||||||||||||||||  ||||||| ||| ||||||||||    
T  35960403 aaatagtttgactttattttatcttttattatagaaatagtttat 35960359  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 7368132 - 7368205
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtt 149  Q
    |||||||| | |||||||||||||||||||||||  ||| |||||||||| || || | ||||| |||||||||    
T  7368132 tatgaaaacaatttgactttattttactttttatcatagaaatagtttattcataagcgcttaaataagttgtt 7368205  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 23676707 - 23676648
Alignment:
Q  80 aaaatagtttgactttatttta-ctttttattgtaggaatagtttatacaaaaccactta 138  Q
    ||||||||| |||||||||||| ||||||||||||  ||||| |||||||||| ||||||    
T  23676707 aaaatagttcgactttattttatctttttattgtataaatagattatacaaaagcactta 23676648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 36734887 - 36734825
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccactta 138  Q
    ||||||||||||||||||||||||||| |||| || ||| || || ||||||| || ||||||    
T  36734887 tatgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcactta 36734825  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 41240956 - 41241013
Alignment:
Q  79 gaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccact 136  Q
    |||||||||| ||||||||||||  |||| || ||||||||||||||||| |||||||    
T  41240956 gaaaatagttcgactttattttatattttgttataggaatagtttatacataaccact 41241013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 37034040 - 37033986
Alignment:
Q  74 cttatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    ||||||||||| ||||||||||||||||  |||| || ||| |||||||||||||    
T  37034040 cttatgaaaatcgtttgactttattttatctttttttatagaaatagtttataca 37033986  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 26184745 - 26184693
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    |||||||||| |||||||||||||||| |||| || ||| |||||||||||||    
T  26184745 tatgaaaataatttgactttattttaccttttcttatagaaatagtttataca 26184693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 26293178 - 26293238
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaac 132  Q
    |||||||||||| | ||||||||||||||||||||| || ||| ||||| |||| ||||||    
T  26293178 agcttatgaaaacaatttgactttattttactttttgttatagaaatagcttatgcaaaac 26293238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 6265077 - 6265012
Alignment:
Q  87 tttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttat 152  Q
    ||||||||||||||| ||||| || ||| | ||| ||||| |||| ||| ||||||||||||||||    
T  6265077 tttgactttattttattttttgttatagaagtagcttatataaaagcacataattaagttgtttat 6265012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 5150930 - 5150854
Alignment:
Q  77 atgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttatc 153  Q
    |||||||||||||||||||||||||  ||||  |||||  |||| | ||||| || || ||||||||||||| ||||    
T  5150930 atgaaaatagtttgactttattttatattttcctgtagatatagctaatacataagcatttaattaagttgtgtatc 5150854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 31002755 - 31002688
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaa 143  Q
    |||||||||| |||||||||||||||  |||| | || | ||||||||||||| || |||||||||||    
T  31002755 tatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataagcacttaattaa 31002688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 33601165 - 33601212
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaata 119  Q
    |||||||||||| ||||||||||||||||| |||||| ||||| ||||    
T  33601165 agcttatgaaaacagtttgactttattttattttttagtgtagaaata 33601212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 5006585 - 5006637
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    |||||||| |||||||||||||||||  |||| || ||||||||| |||||||    
T  5006585 tatgaaaacagtttgactttattttatcttttgttataggaatagcttataca 5006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 8697646 - 8697605
Alignment:
Q  87 tttgactttattttactttttattgtaggaatagtttataca 128  Q
    |||||||||||| ||  |||||||||||||||||||||||||    
T  8697646 tttgactttattctatcttttattgtaggaatagtttataca 8697605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 9049533 - 9049492
Alignment:
Q  87 tttgactttattttactttttattgtaggaatagtttataca 128  Q
    |||||||||||| ||  |||||||||||||||||||||||||    
T  9049533 tttgactttattctatcttttattgtaggaatagtttataca 9049492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 6241157 - 6241185
Alignment:
Q  73 gcttatgaaaatagtttgactttatttta 101  Q
    |||||||||||||||||||||||||||||    
T  6241157 gcttatgaaaatagtttgactttatttta 6241185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 20192682 - 20192766
Alignment:
Q  76 tatgaaaatagtttgactttattttactttttattgtaggaatagtttatacaaaaccacttaattaagttgtttatcaaaacat 160  Q
    ||||||||  ||||||||||||||||  |||| || ||  ||||| ||||||| || ||||||||| || |||||||| ||||||    
T  20192682 tatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcacttaattgagctgtttatccaaacat 20192766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 44284130 - 44284186
Alignment:
Q  72 agcttatgaaaatagtttgactttattttactttttattgtaggaatagtttataca 128  Q
    |||||||||||| ||||||||||| ||||| ||||| || ||| ||||| |||||||    
T  44284130 agcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttataca 44284186  T

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